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[179652_at]

Description F57C2.6 /REP_DB=WormBase Gene ID /WP=CE23787 /TR=O45243 /GB=CAB03846.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 31      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 143
(3)
A 		106.1
(1.2)
A 		23
(-3)
A 		114.8
(1.6)
A 		120
B 120.9
(3)
A 		16.1
(-3)
A 		87.8
(1.1)
A 		82.4
(0.8)
A 		105
C 64.1
(-3)
A 		108.9
(1.6)
A 		122.4
(3)
A 		84.2
(-0.9)
A 		58
avr 109.3
(3) 		77
(-3) 		77.7
(-2.9) 		93.8
(0.1) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 41.1
(-3)
A 		87.8
(1.1)
A 		57.8
(-1.5)
A 		108.7
(3)
A 		54.6
(-1.8)
A 		101.2
(2.3)
A 		68
B 70.6
(2)
A 		71.8
(2.1)
A 		64.2
(1.2)
A 		28.1
(-3)
A 		43.6
(-1.2)
A 		79.1
(3)
A 		51
C 85.9
(1.4)
A 		43.1
(-1.5)
A 		21.7
(-3)
A 		44.7
(-1.4)
A 		73.4
(0.6)
A 		108.5
(3)
A 		87
avr 65.9
(-0.8) 		67.6
(-0.6) 		47.9
(-3) 		60.5
(-1.4) 		57.2
(-1.8) 		96.3
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 52.1
(3)
A 		23
(-0.8)
A 		6
(-3)
A 		16.8
(-1.6)
A 		46
B 38.5
(3)
A 		4
(-3)
A 		20.4
(-0.1)
A 		17.6
(-0.6)
A 		35
C 21.2
(-1.5)
A 		31.3
(0.6)
A 		42.7
(3)
A 		14.2
(-3)
A 		29
avr 37.3
(3) 		19.4
(-2.1) 		23
(-1.1) 		16.2
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 7.6
(-3)
A 		31.2
(3)
A 		12.6
(-1.7)
A 		27.6
(2.1)
A 		16.5
(-0.7)
A 		24.6
(1.3)
A 		24
B 24.6
(1.7)
A 		23.9
(1.5)
A 		15.6
(-0.8)
A 		7.4
(-3)
A 		17.7
(-0.2)
A 		29.5
(3)
A 		22
C 31.8
(2.1)
A 		13.1
(-1.5)
A 		5.5
(-3)
A 		9
(-2.3)
A 		23.7
(0.5)
A 		36.3
(3)
A 		31
avr 21.3
(0.2) 		22.7
(0.7) 		11.2
(-3) 		14.7
(-1.9) 		19.3
(-0.4) 		30.1
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2985
Sequence Type Exemplar sequence
Representative Public ID F57C2.6 NCBI
Target Description F57C2.6 /REP_DB=WormBase Gene ID /WP=CE23787 /TR=O45243 /GB=CAB03846.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064619(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064619 NCBI Caenorhabditis elegans F57C2.6 (F57C2.6) mRNA, complete cds. 11/11 None
F57C2.6 ENSEMBL cdna:known chromosome:CEL140:II:14528645:14534006:1 gene:F57C2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006887 5/11 Cross Hyb Matching Probes None
GENEFINDER00000006890 5/11 Cross Hyb Matching Probes None
SNAP00000026412 6/11 Cross Hyb Matching Probes None
GENEFINDER00000026425 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14528663-14533329(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57C2.6
Entrez Gene 175113 Entrez gene
SwissProt O45243 EMBL-EBI
WormBase CE35560 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03846 Hypothetical protein F57C2.6 [Caenorhabditis elegans] emb|CAB05528.3| Hypothetical protein F57C2.6 [Caenorhabditis elegans] ref|NP_497020.2| F57C2.6 [Caenorhabditis elegans] 0.0
blast CAE73428 Hypothetical protein CBG20871 [Caenorhabditis briggsae] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:179652_AT
gaaaattcgtcgatgctctctaacgatgatttgatgctaaatgagacgaatggacaacat
tttaacgactcgctctcgccagtacgtaaagacgtgacagatgacattgatgaaccggag
acaagtatgacaacttccggtgcaactgcatcacaaattgcaattaatatctcgattctc
aatgattgtatgatgaactcgattgacgaagaagaaattgatggaaatgaggaagaaggg
aaaaatgaagctgttcatcatcagcacaatgtcttctctcattctcatttggatgccaac
gaatacgagattctcgaccgttcttcttcatccaacgcgacgccacgtcacgaggatctc
gactggacgccacgtcgatttccgggctcggcgaacagcaacccaatgctccgcgggatt
atcacttccggaggcagtggtggtggcggtccacaagattttagacgttttgtgttcgac
atgtcgccgattcatcctaatcataatgctcctggagccatgagaactccgttacaacgg
tgccatccagtgaatttgccacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATTCGTCGATGCTCTCTAACG 332 353 925 Antisense
GACAACATTTTAACGACTCGCTCTC 340 365 977 Antisense
TCGCTCTCGCCAGTACGTAAAGACG 103 599 994 Antisense
AGTATGACAACTTCCGGTGCAACTG 156 63 1048 Antisense
TCATCAGCACAATGTCTTCTCTCAT 272 621 1182 Antisense
ATACGAGATTCTCGACCGTTCTTCT 577 23 1227 Antisense
ACGCCACGTCACGAGGATCTCGACT 218 91 1264 Antisense
GCTCCGCGGGATTATCACTTCCGGA 644 297 1332 Antisense
GTGTTCGACATGTCGCCGATTCATC 448 485 1396 Antisense
GAACTCCGTTACAACGGTGCCATCC 604 347 1448 Antisense
GGTGCCATCCAGTGAATTTGCCACG 669 499 1463 Antisense
Sequence Source Affymetrix Proprietary Database