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[179651_s_at]

Description C06H5.1 /REP_DB=WormBase Gene ID /WP=CE27668 /TR=O17577 /GB=CAB07161.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 64      6grp_total > 74      4grp_total > 08      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 512.4
(-3)
P 		637
(-1.1)
P 		593.6
(-1.7)
P 		900
(3)
P 		388
B 621.4
(-2.8)
P 		613.3
(-3)
P 		677
(-1.6)
P 		890.1
(3)
P 		277
C 607.2
(-1.3)
P 		492.2
(-3)
P 		731.6
(0.5)
P 		898.8
(3)
P 		407
avr 580.3
(-3) 		580.8
(-3) 		667.4
(-1.3) 		896.3
(3) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1121
1 2 3 4 5 6 range
A 353.3
(-3)
P 		543.7
(-1.5)
P 		1113.7
(3)
P 		1068.8
(2.6)
P 		959.5
(1.8)
P 		895.7
(1.3)
P 		760
B 281.3
(-3)
P 		602.2
(-1.3)
P 		1231
(2.1)
P 		1402.5
(3)
P 		994.6
(0.8)
P 		1053.2
(1.1)
P 		1121
C 413.6
(-3)
P 		555.9
(-2)
P 		869.4
(0.1)
P 		1304.9
(3)
P 		822.3
(-0.2)
P 		1105.8
(1.7)
P 		891
avr 349.4
(-3) 		567.3
(-1.6) 		1071.4
(1.8) 		1258.7
(3) 		925.5
(0.8) 		1018.2
(1.4) 		909
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 186.6
(3)
P 		138.3
(-2.3)
P 		155.2
(-0.4)
P 		131.7
(-3)
P 		55
B 198.2
(3)
P 		151.5
(-3)
P 		156.9
(-2.3)
P 		189.7
(1.9)
P 		47
C 201
(0.1)
P 		141.5
(-3)
P 		255
(3)
P 		151.6
(-2.5)
P 		114
avr 195.3
(3) 		143.8
(-3) 		189
(2.3) 		157.7
(-1.4) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 65.1
(-3)
P 		193.4
(0.4)
P 		242.5
(1.7)
P 		271.1
(2.5)
P 		289.5
(3)
P 		218.1
(1.1)
P 		224
B 97.9
(-3)
P 		200.5
(-1)
P 		298.9
(0.9)
P 		371.5
(2.4)
P 		404.1
(3)
P 		392.7
(2.8)
P 		306
C 153.3
(-3)
P 		169.6
(-2.5)
P 		221.3
(-1.1)
P 		262.4
(0)
P 		266.1
(0.1)
P 		370.2
(3)
P 		217
avr 105.4
(-3) 		187.8
(-0.8) 		254.2
(1) 		301.7
(2.3) 		319.9
(2.8) 		327
(3) 		222
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179651_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12815
Sequence Type Exemplar sequence
Representative Public ID C06H5.1 NCBI
Target Description C06H5.1 /REP_DB=WormBase Gene ID /WP=CE27668 /TR=O17577 /GB=CAB07161.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171558 NCBI Caenorhabditis elegans C06H5.1 (C06H5.1) mRNA, complete cds. 11/11 None
SNAP00000016163 ENSEMBL cdna:SNAP chromosome:CEL140:V:17897948:17899337:-1 11/11 None
GENEFINDER00000016171 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17897948:17899437:-1 11/11 None
C06H5.1 ENSEMBL cdna:known chromosome:CEL140:V:17897877:17899362:-1 gene:C06H5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17902512-17904437(+) 93.16 93.16
chrV:17897947-17899337(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06H5.1
Entrez Gene 180171 Entrez gene
SwissProt O17577 EMBL-EBI
WormBase CE27668 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07161 Hypothetical protein C06H5.1 [Caenorhabditis elegans] ref|NP_741646.1| C06H5.1 [Caenorhabditis elegans] 0.0
blast CAB07162 Hypothetical protein C06H5.2 [Caenorhabditis elegans] ref|NP_507510.1| C06H5.2 [Caenorhabditis elegans] 0.0
blast NP_504642 T05H4.2 [Caenorhabditis elegans] gb|AAB66009.1| Hypothetical protein T05H4.2 [Caenorhabditis elegans] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.3E-34
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.9E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.3E-34
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.9E-5
Sequence
Target Sequence 
>C. ELEGANS:179651_S_AT
gctttctcagaaaatgatatcaccaggcttcgagatgaggttgttctggaatcaaccaag
tttgaatattttacttgcgaaagagtgcaatttgatgcaacacatctccttagagttttt
gattcacactccgctctaaatagtttgtctggatcaattgtttataaatctagaaatgta
acattcgacattgcttatcaaccggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTCTCAGAAAATGATATCACCA 277 305 961 Antisense
AAAATGATATCACCAGGCTTCGAGA 297 133 971 Antisense
GAGGTTGTTCTGGAATCAACCAAGT 198 403 997 Antisense
GCAATTTGATGCAACACATCTCCTT 123 323 1047 Antisense
GATGCAACACATCTCCTTAGAGTTT 156 413 1054 Antisense
GCAACACATCTCCTTAGAGTTTTTG 374 319 1057 Antisense
AGAGTTTTTGATTCACACTCCGCTC 28 69 1072 Antisense
TGATTCACACTCCGCTCTAAATAGT 221 565 1080 Antisense
CACACTCCGCTCTAAATAGTTTGTC 498 195 1085 Antisense
ACTCCGCTCTAAATAGTTTGTCTGG 293 99 1088 Antisense
ATTCGACATTGCTTATCAACCGGAT 262 9 1143 Antisense
Sequence Source Affymetrix Proprietary Database