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[179649_s_at]

Description C13B4.1 /REP_DB=WormBase Gene ID /WP=CE23540 /TR=O45247 /GB=CAB03875.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      6grp_highest_nonorm > 73      6grp_total > 94      4grp_total > 51      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 378.9
(0.2)
P 		490.7
(3)
P 		391.9
(0.5)
P 		250.3
(-3)
A 		240
B 374
(2.6)
P 		387.7
(3)
P 		331.6
(1.2)
P 		204.3
(-3)
A 		183
C 354.9
(0.2)
M 		478.7
(3)
P 		458.8
(2.5)
P 		215.4
(-3)
A 		263
avr 369.3
(0.8) 		452.4
(3) 		394.1
(1.5) 		223.3
(-3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 685
1 2 3 4 5 6 range
A 390.5
(-2.3)
P 		418.5
(-2)
P 		315
(-3)
P 		585.5
(-0.4)
P 		936.5
(3)
P 		603.1
(-0.2)
P 		622
B 297.4
(-2.5)
P 		459.1
(-0.6)
P 		251.6
(-3)
P 		572
(0.8)
P 		760.9
(3)
P 		533.9
(0.3)
P 		509
C 300.5
(-3)
P 		412.5
(-1.9)
P 		358.2
(-2.4)
P 		624.4
(0.2)
P 		908.2
(3)
P 		461.6
(-1.4)
P 		608
avr 329.5
(-2.8) 		430
(-1.7) 		308.3
(-3) 		594
(0.1) 		868.5
(3) 		532.9
(-0.6) 		560
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 138
(3)
P 		106.5
(1.1)
P 		102.5
(0.9)
P 		36.6
(-3)
A 		101
B 119.3
(3)
P 		95.8
(1.1)
P 		76.8
(-0.4)
P 		43.5
(-3)
A 		76
C 117.5
(0.9)
M 		137.6
(1.9)
P 		159.9
(3)
P 		36.3
(-3)
A 		124
avr 124.9
(3) 		113.3
(2.2) 		113.1
(2.2) 		38.8
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 72
(-2.9)
P 		148.8
(-0.8)
P 		68.6
(-3)
P 		148.5
(-0.8)
P 		282.6
(3)
P 		146.8
(-0.8)
P 		214
B 103.5
(-2)
P 		152.8
(-0.8)
P 		61.1
(-3)
P 		151.5
(-0.8)
P 		309.1
(3)
P 		199.1
(0.3)
P 		248
C 111.4
(-2.4)
P 		125.9
(-2)
P 		91.2
(-3)
P 		125.6
(-2)
P 		293.9
(3)
P 		154.5
(-1.1)
P 		203
avr 95.6
(-2.4) 		142.5
(-1.1) 		73.6
(-3) 		141.9
(-1.2) 		295.2
(3) 		166.8
(-0.5) 		222
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179649_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3726
Sequence Type Exemplar sequence
Representative Public ID C13B4.1 NCBI
Target Description C13B4.1 /REP_DB=WormBase Gene ID /WP=CE23540 /TR=O45247 /GB=CAB03875.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064604 NCBI Caenorhabditis elegans C13B4.1 (C13B4.1) mRNA, complete cds. 11/11 None
SNAP00000027403 ENSEMBL cdna:SNAP chromosome:CEL140:II:14470424:14479517:-1 11/11 None
GENEFINDER00000027405 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14469469:14479517:-1 11/11 None
C13B4.1 ENSEMBL cdna:known chromosome:CEL140:II:14470300:14479517:-1 gene:C13B4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14470420-14479514(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13B4.1
Entrez Gene 175104 Entrez gene
SwissProt O45247 EMBL-EBI
WormBase CE35395 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6584 catecholamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4500 dopamine beta-monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03875 Hypothetical protein C13B4.1 [Caenorhabditis elegans] ref|NP_497005.2| C13B4.1 [Caenorhabditis elegans] 0.0
blast CAE57930 Hypothetical protein CBG00983 [Caenorhabditis briggsae] 0.0
blast EAA09429 ENSANGP00000003654 [Anopheles gambiae str. PEST] ref|XP_314066.2| ENSANGP00000003654 [Anopheles gambiae str. PEST] 7.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR005018 EMBL-EBI DOMON domain 2.2E-35
Pfam IPR005018 EMBL-EBI DOMON domain 1.6E-33
Pfam IPR005018 EMBL-EBI DOMON domain 3.1E-33
Pfam IPR005018 EMBL-EBI DOMON domain 9.1E-34
Pfam IPR005018 EMBL-EBI DOMON domain 8.9E-7
Pfam IPR005018 EMBL-EBI DOMON domain 2.7E-20
Pfam IPR005018 EMBL-EBI DOMON domain 1.6E-33
Pfam IPR005018 EMBL-EBI DOMON domain 3.1E-33
Pfam IPR005018 EMBL-EBI DOMON domain 9.1E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497005.2 6 754-776,797-816,831-850,863-885,895-917,985-1007
C13B4.1 6 754-776,797-816,831-850,863-885,895-917,985-1007
SNAP00000027403 6 754-776,797-816,831-850,863-885,895-917,985-1007
GENEFINDER00000027405 5 780-802,823-842,857-876,889-911,921-943
Sequence
Target Sequence 
>C. ELEGANS:179649_S_AT
gctctcatgattgcagcctttgtgctaatcttgatacataaagattggaagttcactaca
attggctggggtggaaagcatgcaattattggaattatcgcactttgtttggcatggctt
caaccatttatcagtactctgagatgctcaccaaatgattctcgacgtccaattttcaat
tatatccatcgaggaattgctactgccatatgtattgctggatatcattttactggaggg
agacacgtcgttcagctcgttctagcgcttattccaatttccgtgatctttgcattatca
ttgttctttataattttcaacaatgttgtcgatgtggacacaaagtcatttacaaagacg
aacggagcttcggccagaaccgaagatataccgatgcggcccacttcgaaaactgaatct
gaaacaacttgggccattcagtccccgccaaccagcaccgatagcaaccgggaggtgcct
gccgagaagaagaggctttgggtgaaccgcttccgggagtttgtggtctacggtgctgta
ctgattttcatcgctgttggcacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTCATGATTGCAGCCTTTGTGC 238 301 2422 Antisense
TATCGCACTTTGTTTGGCATGGCTT 202 659 2517 Antisense
GGCTTCAACCATTTATCAGTACTCT 567 537 2537 Antisense
CTCACCAAATGATTCTCGACGTCCA 62 227 2568 Antisense
TGGAGGGAGACACGTCGTTCAGCTC 93 551 2655 Antisense
TCGTTCTAGCGCTTATTCCAATTTC 653 603 2678 Antisense
GAAGATATACCGATGCGGCCCACTT 135 337 2803 Antisense
GAAACAACTTGGGCCATTCAGTCCC 335 355 2842 Antisense
TGAACCGCTTCCGGGAGTTTGTGGT 101 575 2924 Antisense
TGTGGTCTACGGTGCTGTACTGATT 541 553 2943 Antisense
TGATTTTCATCGCTGTTGGCACAAT 687 563 2963 Antisense
Sequence Source Affymetrix Proprietary Database