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[179648_at]

Description K07A1.7 /REP_DB=WormBase Gene ID /WP=CE11852 /TR=P90912 /GB=CAB03168.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 3.9
(-3)
A 		5.7
(-2.9)
A 		28.4
(-2.2)
A 		194.8
(3)
P 		191
B 36.1
(-2)
A 		34.7
(-2)
A 		5.8
(-3)
A 		180
(3)
P 		174
C 16.3
(-2.7)
A 		6.5
(-3)
A 		19.7
(-2.6)
A 		227.6
(3)
P 		221
avr 18.8
(-2.9) 		15.6
(-3) 		18
(-2.9) 		200.8
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 70.5
(-0.9)
A 		2.1
(-3)
A 		40.9
(-1.8)
A 		85.5
(-0.5)
P 		200.7
(3)
P 		71.5
(-0.9)
P 		199
B 5.5
(-3)
A 		27.9
(-2.3)
A 		8.2
(-2.9)
A 		126.4
(0.8)
P 		195.9
(3)
P 		141.8
(1.3)
P 		190
C 4.4
(-3)
A 		37.4
(-1.4)
A 		21.6
(-2.1)
A 		119.2
(2.7)
P 		124.9
(3)
P 		90.4
(1.3)
P 		121
avr 26.8
(-2.8) 		22.5
(-3) 		23.6
(-3) 		110.4
(0.5) 		173.8
(3) 		101.2
(0.1) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 1.4
(-3)
A 		1.2
(-3)
A 		7.4
(-1.6)
A 		28.5
(3)
P 		27
B 11.5
(-1.4)
A 		8.6
(-1.8)
A 		1.3
(-3)
A 		38.4
(3)
P 		37
C 5.4
(-2.4)
A 		1.9
(-3)
A 		6.9
(-2.2)
A 		38.4
(3)
P 		37
avr 6.1
(-2.6) 		3.9
(-3) 		5.2
(-2.8) 		35.1
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 13
(-1.8)
A 		0.7
(-3)
A 		8.9
(-2.2)
A 		21.7
(-0.9)
P 		60.6
(3)
P 		17.4
(-1.3)
P 		60
B 1.9
(-3)
A 		9.3
(-2.4)
A 		2
(-3)
A 		33.5
(-0.6)
P 		79.6
(3)
P 		52.9
(0.9)
P 		78
C 1.6
(-3)
A 		11.4
(-1.5)
A 		5.5
(-2.4)
A 		24
(0.5)
P 		40.4
(3)
P 		30.2
(1.4)
P 		39
avr 5.5
(-3) 		7.1
(-2.8) 		5.5
(-3) 		26.4
(-0.7) 		60.2
(3) 		33.5
(0.1) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179648_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.511
Sequence Type Exemplar sequence
Representative Public ID K07A1.7 NCBI
Target Description K07A1.7 /REP_DB=WormBase Gene ID /WP=CE11852 /TR=P90912 /GB=CAB03168.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060146 NCBI Caenorhabditis elegans K07A1.7 (K07A1.7) mRNA, complete cds. 11/11 None
SNAP00000041849 ENSEMBL cdna:SNAP chromosome:CEL140:I:9603792:9605291:-1 10/11 None
GENEFINDER00000041865 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9603792:9609138:-1 10/11 None
K07A1.7 ENSEMBL cdna:known chromosome:CEL140:I:9603994:9605291:-1 gene:K07A1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9603924-9605222(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07A1.7
Entrez Gene 187082 Entrez gene
SwissProt P90912 EMBL-EBI
WormBase CE11852 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE60166 Hypothetical protein CBG03720 [Caenorhabditis briggsae] 1.0E-152
blast CAE60166 Hypothetical protein CBG03720 [Caenorhabditis briggsae] 1.0E-147
blast CAB03168 Hypothetical protein K07A1.7 [Caenorhabditis elegans] ref|NP_492547.1| K07A1.7 [Caenorhabditis elegans] 1.0E-144
blast CAB03168 Hypothetical protein K07A1.7 [Caenorhabditis elegans] ref|NP_492547.1| K07A1.7 [Caenorhabditis elegans] 1.0E-130
blast CAE60166 Hypothetical protein CBG03720 [Caenorhabditis briggsae] 1.0E-126
blast AAF57033 CG15532-PA, isoform A [Drosophila melanogaster] ref|NP_524592.2| CG15532-PA, isoform A [Drosophila melanogaster] gb|AAL25470.1| LD44381p [Drosophila melanogaster] 4.0E-26
blast AAF57033 CG15532-PA, isoform A [Drosophila melanogaster] ref|NP_524592.2| CG15532-PA, isoform A [Drosophila melanogaster] gb|AAL25470.1| LD44381p [Drosophila melanogaster] 5.0E-26
Sequence
Target Sequence 
>C. ELEGANS:179648_AT
gatgatgttcgtttgtgtctgttgaagtcacttggagcacataatctcagagcaattcca
tgcgttcaatgcaaggatgagctaaaggtatacgacaagtatccactgattgacggtgtc
ttctacatctcaccagtttctcaatttggaccaaaaactgaaatttcattggacggacgt
cgcttctacctacaacaactatgtgcaagatgtctctggtctgattggtcatgtaaaaac
tgtggaaaagatgaatggtttgatggaaaatcatttgttttgggaactctctactattat
gatattgtatcttccggtcgctgctgtcctgttgtctgtcaatcttgcaggcaatctctt
ggagttcgtgatcaattggcaactcaacttgctaatgtaagagcattgagaataaatagt
acaaaacttgcacagcgcgcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATGTTCGTTTGTGTCTGTTGA 210 411 265 Antisense
GAGCAATTCCATGCGTTCAATGCAA 397 391 314 Antisense
TGATTGACGGTGTCTTCTACATCTC 111 565 371 Antisense
TCATTGGACGGACGTCGCTTCTACC 125 617 430 Antisense
TCGCTTCTACCTACAACAACTATGT 279 601 444 Antisense
GATGTCTCTGGTCTGATTGGTCATG 424 409 473 Antisense
GTTTTGGGAACTCTCTACTATTATG 154 447 541 Antisense
TATGATATTGTATCTTCCGGTCGCT 495 655 562 Antisense
TGTCCTGTTGTCTGTCAATCTTGCA 571 557 589 Antisense
GCAGGCAATCTCTTGGAGTTCGTGA 429 311 611 Antisense
GTACAAAACTTGCACAGCGCGCGAC 430 461 683 Antisense
Sequence Source Affymetrix Proprietary Database