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[179647_s_at]

Description W07G1.7 /REP_DB=WormBase Gene ID /WP=CE24041 /TR=Q9XUJ8 /GB=CAB04939.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 1.2
(-3)
A 		9
(3)
A 		3.1
(-1.5)
A 		4.2
(-0.7)
A 		8
B 6.1
(-2.7)
A 		5.2
(-3)
A 		6
(-2.7)
A 		24
(3)
A 		19
C 2
(-2.7)
A 		4.2
(-1.6)
A 		1.3
(-3)
A 		13.3
(3)
A 		12
avr 3.1
(-3) 		6.1
(-1.3) 		3.5
(-2.8) 		13.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.3
(-2.9)
A 		5.8
(3)
A 		3.8
(0.4)
A 		1.2
(-3)
A 		3
(-0.7)
A 		3.6
(0.1)
A 		5
B 3.1
(-3)
A 		3.7
(-1.2)
A 		4.8
(2.1)
A 		4.1
(-0)
A 		4.2
(0.3)
A 		5.1
(3)
A 		2
C 2.5
(-1.1)
A 		1.7
(-2)
A 		5.9
(3)
A 		4.1
(0.8)
A 		5.5
(2.5)
A 		0.9
(-3)
A 		5
avr 2.3
(-3) 		3.7
(0.4) 		4.8
(3) 		3.1
(-1.1) 		4.2
(1.6) 		3.2
(-0.8) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.4
(-3)
A 		2
(3)
A 		0.8
(-1.5)
A 		0.6
(-2.3)
A 		2
B 1.9
(-2.1)
A 		1.3
(-3)
A 		1.4
(-2.8)
A 		5.1
(3)
A 		4
C 0.7
(-2)
A 		1.2
(-0.3)
A 		0.4
(-3)
A 		2.2
(3)
A 		2
avr 1
(-2.6) 		1.5
(-0.9) 		0.9
(-3) 		2.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.2
(-3)
A 		2
(3)
A 		0.8
(-1)
A 		0.3
(-2.7)
A 		0.9
(-0.7)
A 		0.9
(-0.7)
A 		2
B 1.1
(-3)
A 		1.2
(-2.3)
A 		1.2
(-2.3)
A 		1.1
(-3)
A 		1.7
(1.5)
A 		1.9
(3)
A 		1
C 0.9
(-0.6)
A 		0.5
(-2.2)
A 		1.5
(1.8)
A 		0.8
(-1)
A 		1.8
(3)
A 		0.3
(-3)
A 		2
avr 0.7
(-3) 		1.2
(0.8) 		1.2
(0.8) 		0.7
(-3) 		1.5
(3) 		1
(-0.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179647_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2737
Sequence Type Exemplar sequence
Representative Public ID W07G1.7 NCBI
Target Description W07G1.7 /REP_DB=WormBase Gene ID /WP=CE24041 /TR=Q9XUJ8 /GB=CAB04939.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064521 NCBI Caenorhabditis elegans W07G1.7 (W07G1.7) mRNA, complete cds. 11/11 None
W07G1.7 ENSEMBL cdna:known chromosome:CEL140:II:13964783:13966225:-1 gene:W07G1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025663 8/11 Cross Hyb Matching Probes None
GENEFINDER00000025683 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13964779-13966205(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W07G1.7
Entrez Gene 175046 Entrez gene
SwissProt Q9XUJ8 EMBL-EBI
WormBase CE24041 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04939 Hypothetical protein W07G1.7 [Caenorhabditis elegans] ref|NP_496922.1| W07G1.7 [Caenorhabditis elegans] 1.0E-92
blast CAE73315 Hypothetical protein CBG20742 [Caenorhabditis briggsae] 8.0E-50
Sequence
Target Sequence 
>C. ELEGANS:179647_S_AT
atatcgatttgcactatttcttctagttctgacaatttccgactcaaaagttgcgggctc
agagcaaatggcttgtactacgaaggaggagccaattctggtgagcggctcgatcaacaa
ggcatttactatgcaaattactaataaagtgaagagctgtaatgggtactgtgttagcaa
actggtctccctggacgcaaccatggccgacggaaatcaagcccacattcgaaatgtgca
tttttcatgcgttcctatcgtggcgaaggcgatcaaaatgtgcagtaaaacatgcacgac
gcagatctacaaaaacgaaaaatcaagcaagtcgattgatcgaagtgttgggtccttgaa
acgagttttggtcaaagagattggggatttttctttcgagaaagccgaggagaaaacgtg
ctgctgtaaggatgcaaaatgtgcccgacgaatggatgccacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCGATTTGCACTATTTCTTCTA 361 21 21 Antisense
CTAGTTCTGACAATTTCCGACTCAA 207 225 43 Antisense
GCGGGCTCAGAGCAAATGGCTTGTA 317 293 73 Antisense
GCCAATTCTGGTGAGCGGCTCGATC 356 277 111 Antisense
GGCTCGATCAACAAGGCATTTACTA 418 539 127 Antisense
ACTGTGTTAGCAAACTGGTCTCCCT 422 97 188 Antisense
GGCCGACGGAAATCAAGCCCACATT 575 541 225 Antisense
ATTTTTCATGCGTTCCTATCGTGGC 40 15 260 Antisense
AAACATGCACGACGCAGATCTACAA 612 125 308 Antisense
GCCGAGGAGAAAACGTGCTGCTGTA 105 285 424 Antisense
TGTGCCCGACGAATGGATGCCACGA 486 557 460 Antisense
Sequence Source Affymetrix Proprietary Database