[Home] | [Total List]

[179646_at]

Description C18E9.8 /REP_DB=WormBase Gene ID /WP=CE05300 /TR=Q18097 /GB=CAA93857.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 40      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.2
(-2.9)
A 		7
(-3)
A 		11.1
(-1)
A 		19
(3)
A 		12
B 6.8
(-3)
A 		11.4
(1.7)
A 		12.7
(3)
A 		8.4
(-1.4)
A 		6
C 8.9
(-0.2)
A 		10.9
(1.1)
A 		14.1
(3)
A 		4.2
(-3)
A 		10
avr 7.6
(-3) 		9.8
(-0.4) 		12.6
(3) 		10.5
(0.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 10.6
(-2.7)
A 		6.7
(-2.9)
A 		5.5
(-3)
A 		9.9
(-2.8)
A 		48.5
(-0.6)
A 		112
(3)
A 		107
B 8.1
(-2.9)
A 		6.9
(-3)
A 		7.7
(-2.9)
A 		13.1
(-2.5)
A 		49
(0.2)
A 		86.5
(3)
A 		80
C 5.5
(-3)
A 		10.5
(-2.6)
A 		6.2
(-3)
A 		18.4
(-2.1)
A 		49
(0.1)
A 		90.5
(3)
A 		85
avr 8.1
(-2.9) 		8
(-2.9) 		6.5
(-3) 		13.8
(-2.5) 		48.8
(-0.2) 		96.3
(3) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.6
(1.7)
A 		1.5
(-3)
A 		2.9
(3)
A 		2.8
(2.6)
A 		1
B 2.2
(-0.8)
A 		2.8
(2.5)
A 		2.9
(3)
A 		1.8
(-3)
A 		1
C 2.9
(0.1)
A 		3.1
(0.4)
A 		4.9
(3)
A 		0.7
(-3)
A 		4
avr 2.6
(-0.3) 		2.5
(-0.7) 		3.6
(3) 		1.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 2
(-2.8)
A 		2.4
(-2.7)
A 		1.2
(-3)
A 		2.5
(-2.7)
A 		14.6
(0.1)
A 		27.3
(3)
A 		26
B 2.8
(-2.8)
A 		2.3
(-2.9)
A 		1.9
(-3)
A 		3.5
(-2.7)
A 		19.9
(0.6)
A 		32.3
(3)
A 		30
C 2.1
(-2.9)
A 		3.2
(-2.7)
A 		1.6
(-3)
A 		3.7
(-2.6)
A 		15.9
(-0)
A 		30.3
(3)
A 		29
avr 2.3
(-2.9) 		2.6
(-2.8) 		1.6
(-3) 		3.2
(-2.7) 		16.8
(0.2) 		30
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179646_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3672
Sequence Type Exemplar sequence
Representative Public ID C18E9.8 NCBI
Target Description C18E9.8 /REP_DB=WormBase Gene ID /WP=CE05300 /TR=Q18097 /GB=CAA93857.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063513 NCBI Caenorhabditis elegans C18E9.8 (C18E9.8) mRNA, complete cds. 11/11 None
SNAP00000035647 ENSEMBL cdna:SNAP chromosome:CEL140:II:8985929:8987930:-1 11/11 None
GENEFINDER00000035654 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8985929:8987873:-1 11/11 None
C18E9.8 ENSEMBL cdna:known chromosome:CEL140:II:8985929:8987930:-1 gene:C18E9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8985925-8987927(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18E9.8
Entrez Gene 182791 Entrez gene
SwissProt Q18097 EMBL-EBI
WormBase CE05300 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93857 Hypothetical protein C18E9.8 [Caenorhabditis elegans] ref|NP_495914.1| C18E9.8 [Caenorhabditis elegans] 0.0
blast CAE59775 Hypothetical protein CBG03227 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179646_AT
atgtgctcgtggagacttgatccctggcgaagttcttgttcaacttctcacctacatgca
tccaatgggagaagttcctcatccggatatgattcgtgcttgcattgtttttgctttcga
tcatggatggaatattgtcaaggaaaacttggaaaatgaatttgagccaccaattacacc
agatgagtacatgtcgcaattgatgtttggagacaagtttgatctcaaaaacttgctccg
tgtcaatattcaaagagccgagtcaagttgtcgtgaacttgccgaggttttggagagaca
tggaaaactgaaaatcttgaaggatcgtactcatgaaggaatcatggacagaatgtgcag
tggatggggactgaatccaatggtcaatcggctttctactagatttcctacaactttcca
ccaccgtactgtcaatttgcaacgtggtaaagcagtggttgttggagaaggtcgagctgt
tgacacgttgaactctctggcatcggatcacgcatttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCTCGTGGAGACTTGATCCCT 654 47 1224 Antisense
TGATCCCTGGCGAAGTTCTTGTTCA 573 563 1241 Antisense
TCTCACCTACATGCATCCAATGGGA 320 611 1269 Antisense
ATGGGAGAAGTTCCTCATCCGGATA 276 51 1288 Antisense
GAGCCACCAATTACACCAGATGAGT 190 385 1387 Antisense
GATCTCAAAAACTTGCTCCGTGTCA 645 417 1444 Antisense
TCCAATGGTCAATCGGCTTTCTACT 330 585 1599 Antisense
TACTAGATTTCCTACAACTTTCCAC 585 645 1620 Antisense
CACCACCGTACTGTCAATTTGCAAC 583 201 1642 Antisense
TGTTGACACGTTGAACTCTCTGGCA 554 555 1701 Antisense
TCTGGCATCGGATCACGCATTTGGA 555 607 1719 Antisense
Sequence Source Affymetrix Proprietary Database