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[179645_s_at]

Description F56A8.8 /REP_DB=WormBase Gene ID /WP=CE16128 /TR=O45578 /GB=CAB05748.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 2.4
(-3)
A 		14.2
(-1.4)
A 		7.9
(-2.2)
A 		46.1
(3)
A 		44
B 1.2
(-3)
A 		4.9
(-2.6)
A 		7.9
(-2.3)
A 		57.5
(3)
A 		56
C 1.5
(-2.9)
A 		1.3
(-3)
A 		17
(3)
A 		8.1
(-0.4)
A 		16
avr 1.7
(-3) 		6.8
(-2.1) 		10.9
(-1.4) 		37.2
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 11.3
(-2.6)
A 		1.4
(-3)
A 		4.2
(-2.9)
A 		11.5
(-2.6)
A 		8.5
(-2.7)
A 		138.3
(3)
P 		137
B 18.9
(-2.2)
A 		7
(-2.8)
A 		1.8
(-3)
A 		26.6
(-1.8)
A 		44
(-1)
M 		130.4
(3)
P 		129
C 22.3
(-2.5)
A 		30.4
(-2.2)
A 		8.4
(-3)
A 		10.9
(-2.9)
A 		24
(-2.4)
A 		172.6
(3)
P 		164
avr 17.5
(-2.5) 		12.9
(-2.7) 		4.8
(-3) 		16.3
(-2.5) 		25.5
(-2.1) 		147.1
(3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.9
(-3)
A 		3.1
(-0.7)
A 		2.1
(-1.8)
A 		6.7
(3)
A 		6
B 0.4
(-3)
A 		1.2
(-2.6)
A 		1.8
(-2.3)
A 		12.2
(3)
A 		12
C 0.5
(-2.9)
A 		0.4
(-3)
A 		5.9
(3)
A 		1.4
(-1.9)
A 		6
avr 0.6
(-3) 		1.6
(-2) 		3.3
(-0.4) 		6.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 2.1
(-2.7)
A 		0.5
(-3)
A 		0.9
(-2.9)
A 		2.9
(-2.6)
A 		2.6
(-2.6)
A 		33.7
(3)
P 		33
B 6.6
(-2.2)
A 		2.3
(-2.8)
A 		0.4
(-3)
A 		7.1
(-2.2)
A 		17.9
(-0.8)
M 		48.6
(3)
P 		48
C 8.3
(-2.3)
A 		9.3
(-2.2)
A 		2.1
(-3)
A 		2.2
(-3)
A 		7.8
(-2.4)
A 		57.8
(3)
P 		56
avr 5.7
(-2.4) 		4
(-2.6) 		1.1
(-3) 		4.1
(-2.6) 		9.4
(-1.9) 		46.7
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179645_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7099
Sequence Type Exemplar sequence
Representative Public ID F56A8.8 NCBI
Target Description F56A8.8 /REP_DB=WormBase Gene ID /WP=CE16128 /TR=O45578 /GB=CAB05748.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067335 NCBI Caenorhabditis elegans F56A8.8 (F56A8.8) mRNA, complete cds. 11/11 A 
SNAP00000043515 ENSEMBL cdna:SNAP chromosome:CEL140:III:13285333:13286092:1 11/11 None
GENEFINDER00000043523 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13285333:13286088:1 11/11 None
F56A8.8 ENSEMBL cdna:known chromosome:CEL140:III:13285333:13286295:1 gene:F56A8.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13285328-13286291(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56A8.8
Entrez Gene 176746 Entrez gene
SwissProt O45578 EMBL-EBI
WormBase CE16128 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05748 Hypothetical protein F56A8.8 [Caenorhabditis elegans] ref|NP_499736.1| F56A8.8 [Caenorhabditis elegans] 1.0E-124
blast CAB05748 Hypothetical protein F56A8.8 [Caenorhabditis elegans] ref|NP_499736.1| F56A8.8 [Caenorhabditis elegans] 1.0E-114
blast CAE72931 Hypothetical protein CBG20251 [Caenorhabditis briggsae] 2.0E-23
blast CAE72931 Hypothetical protein CBG20251 [Caenorhabditis briggsae] 5.0E-23
blast CAE67379 Hypothetical protein CBG12861 [Caenorhabditis briggsae] 3.0E-21
Sequence
Target Sequence 
>C. ELEGANS:179645_S_AT
actcgttcagttctacgttgacgtcatcgagtacgttcggtttacgtttgtctgtactgg
aaagattccgatccttccacactcgtactacctgactctcttcgtttatcagaagcgtgt
cgaggaaagcacactgttcaacaaaagtctagtgaggatgattccagaagtcttgcaatc
aatgctcaatgtcggaacattcggcaaccaaaatattggaatagactatgttacagactg
caccagagaacactacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCGTTCAGTTCTACGTTGACGTC 609 97 444 Antisense
GACGTCATCGAGTACGTTCGGTTTA 668 377 463 Antisense
GTTCGGTTTACGTTTGTCTGTACTG 630 441 478 Antisense
TGGAAAGATTCCGATCCTTCCACAC 588 547 501 Antisense
CTACCTGACTCTCTTCGTTTATCAG 674 225 531 Antisense
GTCGAGGAAAGCACACTGTTCAACA 450 473 562 Antisense
CCAGAAGTCTTGCAATCAATGCTCA 393 273 607 Antisense
GCAATCAATGCTCAATGTCGGAACA 415 321 618 Antisense
ATGTCGGAACATTCGGCAACCAAAA 243 49 632 Antisense
ATAGACTATGTTACAGACTGCACCA 47 23 664 Antisense
CAGACTGCACCAGAGAACACTACAA 358 205 677 Antisense
Sequence Source Affymetrix Proprietary Database