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[179644_at]

Description F56A8.8 /REP_DB=WormBase Gene ID /WP=CE16128 /TR=O45578 /GB=CAB05748.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 33      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 31.2
(-3)
A 		47.9
(-0.3)
A 		68.5
(3)
A 		58.2
(1.3)
A 		37
B 21.4
(-3)
A 		65.4
(3)
A 		60
(2.3)
A 		46.2
(0.4)
A 		44
C 15.3
(-3)
A 		49.8
(0.3)
A 		34
(-1.2)
A 		77.9
(3)
A 		63
avr 22.6
(-3) 		54.4
(2) 		54.2
(2) 		60.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 70.8
(1.1)
A 		41.1
(-1.5)
A 		24.1
(-3)
A 		49.6
(-0.8)
A 		73.3
(1.3)
A 		92.3
(3)
P 		68
B 69.2
(0.5)
A 		6.1
(-3)
A 		59.4
(-0.1)
A 		31.2
(-1.6)
A 		39.5
(-1.2)
A 		115.6
(3)
P 		110
C 4.2
(-3)
A 		53.9
(1)
A 		64.1
(1.9)
A 		33.8
(-0.6)
A 		61
(1.6)
A 		78.2
(3)
P 		74
avr 48.1
(-1.6) 		33.7
(-3) 		49.2
(-1.5) 		38.2
(-2.6) 		57.9
(-0.6) 		95.4
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.4
(-1.1)
A 		10.4
(-1.8)
A 		17.9
(3)
A 		8.5
(-3)
A 		9
B 6.8
(-3)
A 		16.1
(3)
A 		13.9
(1.6)
A 		9.9
(-1)
A 		9
C 5.1
(-3)
A 		14.3
(3)
A 		11.8
(1.4)
A 		13.1
(2.2)
A 		9
avr 7.8
(-3) 		13.6
(2.2) 		14.5
(3) 		10.5
(-0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 13.1
(-0.3)
A 		14.6
(0.3)
A 		5.2
(-3)
A 		12.6
(-0.4)
A 		22.1
(2.9)
A 		22.5
(3)
P 		17
B 24.1
(0.2)
A 		2
(-3)
A 		14.4
(-1.2)
A 		8.3
(-2.1)
A 		16
(-1)
A 		43.1
(3)
P 		41
C 1.6
(-3)
A 		16.5
(0.6)
A 		16.3
(0.6)
A 		6.8
(-1.7)
A 		19.7
(1.4)
A 		26.2
(3)
P 		25
avr 12.9
(-2) 		11
(-2.5) 		12
(-2.2) 		9.2
(-3) 		19.3
(-0.2) 		30.6
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179644_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7099
Sequence Type Exemplar sequence
Representative Public ID F56A8.8 NCBI
Target Description F56A8.8 /REP_DB=WormBase Gene ID /WP=CE16128 /TR=O45578 /GB=CAB05748.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067335 NCBI Caenorhabditis elegans F56A8.8 (F56A8.8) mRNA, complete cds. 11/11 A 
SNAP00000043515 ENSEMBL cdna:SNAP chromosome:CEL140:III:13285333:13286092:1 11/11 None
GENEFINDER00000043523 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13285333:13286088:1 11/11 None
F56A8.8 ENSEMBL cdna:known chromosome:CEL140:III:13285333:13286295:1 gene:F56A8.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13285328-13286291(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56A8.8
Entrez Gene 176746 Entrez gene
SwissProt O45578 EMBL-EBI
WormBase CE16128 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05748 Hypothetical protein F56A8.8 [Caenorhabditis elegans] ref|NP_499736.1| F56A8.8 [Caenorhabditis elegans] 1.0E-124
blast CAB05748 Hypothetical protein F56A8.8 [Caenorhabditis elegans] ref|NP_499736.1| F56A8.8 [Caenorhabditis elegans] 1.0E-114
blast CAE72931 Hypothetical protein CBG20251 [Caenorhabditis briggsae] 2.0E-23
blast CAE72931 Hypothetical protein CBG20251 [Caenorhabditis briggsae] 5.0E-23
blast CAE67379 Hypothetical protein CBG12861 [Caenorhabditis briggsae] 3.0E-21
Sequence
Target Sequence 
>C. ELEGANS:179644_AT
gaaggacattcacgtctttgcgagaaaaattaatgaagaatgcgagcgcttcatcgataa
tcatatagaggttaacggggaggaggacgccgttaaccagagaattccgaccttcttcat
caagagctacaactttttgaaaaaagaagcagaatctgtgagctacgaggatcgctttct
cgacttcatcccacaatgtattcgaatgaaggtgaccaccgagcaatacggacccccaaa
ctgtttccccgaagccgacgagaatggatatctcaaagatgagccgaaacgtttggcgga
cgaactcgttcagttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGACATTCACGTCTTTGCGAGA 684 333 141 Antisense
GAATGCGAGCGCTTCATCGATAATC 208 331 178 Antisense
GAGGACGCCGTTAACCAGAGAATTC 418 403 223 Antisense
AACCAGAGAATTCCGACCTTCTTCA 259 147 235 Antisense
GCAGAATCTGTGAGCTACGAGGATC 76 313 289 Antisense
TACGAGGATCGCTTTCTCGACTTCA 283 649 304 Antisense
CTCGACTTCATCCCACAATGTATTC 313 233 319 Antisense
GGTGACCACCGAGCAATACGGACCC 287 495 351 Antisense
TTTCCCCGAAGCCGACGAGAATGGA 426 667 384 Antisense
GATGAGCCGAAACGTTTGGCGGACG 618 405 418 Antisense
TTGGCGGACGAACTCGTTCAGTTCT 585 691 433 Antisense
Sequence Source Affymetrix Proprietary Database