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[179643_at]

Description Y6E2A.6 /REP_DB=WormBase Gene ID /WP=CE16582 /TR=O45973 /GB=CAA15967.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 22      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 36.6
(-0.8)
A 		46.1
(-0.1)
A 		7
(-3)
A 		86.6
(3)
A 		80
B 41.9
(-0.4)
A 		26.3
(-3)
A 		61.7
(3)
A 		54.5
(1.8)
A 		35
C 115.8
(3)
A 		28
(-2.9)
A 		26
(-3)
A 		43.8
(-1.8)
A 		90
avr 64.8
(3) 		33.5
(-2.7) 		31.6
(-3) 		61.6
(2.4) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 34.7
(-0.2)
A 		12.5
(-2.1)
A 		72
(3)
P 		15
(-1.9)
A 		28.3
(-0.8)
A 		2.5
(-3)
A 		70
B 36
(-1.2)
A 		55.6
(3)
A 		29.2
(-2.7)
A 		37.5
(-0.9)
A 		29
(-2.7)
A 		27.8
(-3)
A 		28
C 42
(0.7)
A 		63.2
(3)
A 		36.2
(0.1)
A 		21.6
(-1.4)
A 		34.9
(-0)
A 		6.9
(-3)
A 		56
avr 37.6
(1.5) 		43.8
(2.6) 		45.8
(3) 		24.7
(-0.8) 		30.7
(0.3) 		12.4
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 13.3
(3)
A 		10
(1.3)
A 		1.8
(-3)
A 		12.7
(2.7)
A 		12
B 13.3
(2.2)
A 		6.5
(-3)
A 		14.3
(3)
A 		11.6
(0.9)
A 		8
C 38.3
(3)
A 		8.1
(-2.9)
A 		9.1
(-2.7)
A 		7.4
(-3)
A 		31
avr 21.6
(3) 		8.2
(-3) 		8.4
(-2.9) 		10.6
(-1.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.4
(-0.7)
A 		4.4
(-1.5)
A 		15.7
(3)
P 		3.8
(-1.7)
A 		8.5
(0.1)
A 		0.6
(-3)
A 		15
B 12.5
(-0.2)
A 		18.5
(3)
A 		7.1
(-3)
A 		9.9
(-1.5)
A 		11.8
(-0.5)
A 		10.4
(-1.3)
A 		11
C 15.6
(1.7)
A 		19.3
(3)
A 		9.2
(-0.6)
A 		4.3
(-2.3)
A 		11.3
(0.2)
A 		2.3
(-3)
A 		17
avr 11.5
(1.4) 		14.1
(3) 		10.7
(0.9) 		6
(-2) 		10.5
(0.8) 		4.4
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179643_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12910
Sequence Type Exemplar sequence
Representative Public ID Y6E2A.6 NCBI
Target Description Y6E2A.6 /REP_DB=WormBase Gene ID /WP=CE16582 /TR=O45973 /GB=CAA15967.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074512 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-140) (srh-140) mRNA, complete cds. 11/11 None
SNAP00000013593 ENSEMBL cdna:SNAP chromosome:CEL140:V:15725530:15728402:1 11/11 None
Y6E2A.6 ENSEMBL cdna:known chromosome:CEL140:V:15724772:15726583:1 gene:Y6E2A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013600 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15724771-15726583(+) 99.26 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-140
Ensembl Y6E2A.6
Entrez Gene 189377 Entrez gene
SwissProt O45973 EMBL-EBI
WormBase CE16582 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15967 Hypothetical protein Y6E2A.6 [Caenorhabditis elegans] ref|NP_506913.1| Serpentine Receptor, class H family member (srh-140) [Caenorhabditis elegans] 0.0
blast CAA15967 Hypothetical protein Y6E2A.6 [Caenorhabditis elegans] ref|NP_506913.1| Serpentine Receptor, class H family member (srh-140) [Caenorhabditis elegans] 1.0E-145
blast CAA16167 Hypothetical protein F57E7.3 [Caenorhabditis elegans] ref|NP_507171.1| Serpentine Receptor, class H family member (srh-139) [Caenorhabditis elegans] 2.0E-96
blast CAB04317 Hypothetical protein F36D3.6 [Caenorhabditis elegans] ref|NP_507177.2| Serpentine Receptor, class H family member (srh-136) [Caenorhabditis elegans] 1.0E-82
blast CAA16167 Hypothetical protein F57E7.3 [Caenorhabditis elegans] ref|NP_507171.1| Serpentine Receptor, class H family member (srh-139) [Caenorhabditis elegans] 4.0E-61
blast CAB04317 Hypothetical protein F36D3.6 [Caenorhabditis elegans] ref|NP_507177.2| Serpentine Receptor, class H family member (srh-136) [Caenorhabditis elegans] 4.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-108
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506913.1 7 20-39,52-74,94-116,138-160,195-217,248-270,274-296
Y6E2A.6 7 20-39,52-74,94-116,138-160,195-217,248-270,274-296
SNAP00000013593 5 25-44,65-87,122-144,175-197,201-223
Sequence
Target Sequence 
>C. ELEGANS:179643_AT
gtgctaccacagattccgatgaaactaaaataaaaatgatcgaacgatttccttgtctac
cacctgaaataatcactaaacctggatttttaatactcacagaggacacgttggcgctcg
tcgtaattcttctcttgctaacttttttcacattttttcaacttggctacttcttcggaa
tgaccgcaaatttcctatacactactaaaacaatgtccgcaaatactgcaaaactacaaa
aacaattgtttcagcgacttacaattcaaattgtgcttccactttttgcggttttcattc
cctgtatttatctgaatggctccgccgcattccactacttggatatgattttcattaatt
tttcaaatttattcatatctactcatggtcttttatcatgtgttactactattcttgtgc
ataaggcatatcgtgatgcagtttttgatattttcggagctggatgcctgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTACCACAGATTCCGATGAAAC 425 479 485 Antisense
TGATCGAACGATTTCCTTGTCTACC 422 565 521 Antisense
TACTCACAGAGGACACGTTGGCGCT 272 643 578 Antisense
TTCTTCTCTTGCTAACTTTTTTCAC 235 691 611 Antisense
TTGGCTACTTCTTCGGAATGACCGC 706 707 647 Antisense
TGACCGCAAATTTCCTATACACTAC 534 567 665 Antisense
AATTGTGCTTCCACTTTTTGCGGTT 366 179 753 Antisense
TTGCGGTTTTCATTCCCTGTATTTA 589 695 770 Antisense
CTGTATTTATCTGAATGGCTCCGCC 673 239 786 Antisense
CGCCGCATTCCACTACTTGGATATG 263 257 807 Antisense
TATTTTCGGAGCTGGATGCCTGATA 271 661 933 Antisense
Sequence Source Affymetrix Proprietary Database