[Home] | [Total List]

[179642_at]

Description F32D8.9 /REP_DB=WormBase Gene ID /WP=CE05788 /TR=Q19968 /GB=CAA98459.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_highest_nonorm > 54      6grp_total > 71      4grp_total > 34      6grp_highest_sub > 04      6grp_cgc > 84      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 499
1 2 3 4 range
A 1122.3
(-3)
P 		1448.4
(3)
P 		1426.6
(2.6)
P 		1448.4
(3)
P 		326
B 1184
(-3)
P 		1499.8
(3)
P 		1294.8
(-0.9)
P 		1380.4
(0.7)
P 		316
C 1312.5
(-3)
P 		1621.5
(3)
P 		1369.3
(-1.9)
P 		1515.5
(0.9)
P 		309
avr 1206.3
(-3) 		1523.2
(3) 		1363.6
(-0) 		1448.1
(1.6) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1500
1 2 3 4 5 6 range
A 977.3
(-2.5)
P 		1196
(-1.6)
P 		1449.5
(-0.4)
P 		2216.9
(3)
P 		1188.4
(-1.6)
P 		871.8
(-3)
P 		1345
B 1275.5
(1)
P 		985.1
(-1.1)
P 		1547
(3)
P 		1491.8
(2.6)
P 		1424.6
(2.1)
P 		716.8
(-3)
P 		830
C 1245.1
(-1.4)
P 		1073
(-3)
P 		1738.9
(3)
P 		1474.8
(0.6)
P 		1604.5
(1.8)
P 		1102.2
(-2.7)
P 		666
avr 1166
(-1.1) 		1084.7
(-1.6) 		1578.5
(1.9) 		1727.8
(3) 		1405.8
(0.7) 		896.9
(-3) 		831
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 408.6
(3)
P 		314.4
(0.1)
P 		372.9
(1.9)
P 		212
(-3)
P 		197
B 377.6
(3)
P 		370.4
(2.5)
P 		300
(-2.6)
P 		294.2
(-3)
P 		83
C 434.5
(1.8)
P 		466.2
(2.7)
P 		477.3
(3)
P 		255.5
(-3)
P 		222
avr 406.9
(3) 		383.7
(2.1) 		383.4
(2.1) 		253.9
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 399
1 2 3 4 5 6 range
A 180.2
(-3)
P 		425.3
(0.8)
P 		315.7
(-0.9)
P 		562.3
(3)
P 		358.6
(-0.2)
P 		212.3
(-2.5)
P 		382
B 443.8
(0.4)
P 		327.9
(-1.8)
P 		375.7
(-0.9)
P 		395.1
(-0.5)
P 		578.8
(3)
P 		267.3
(-3)
P 		312
C 461.5
(1.4)
P 		327.4
(-2.2)
P 		442.6
(0.9)
P 		296.6
(-3)
P 		519.2
(3)
P 		369
(-1)
P 		223
avr 361.8
(-0.7) 		360.2
(-0.7) 		378
(-0.2) 		418
(1) 		485.5
(3) 		282.9
(-3) 		203
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179642_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13053
Sequence Type Exemplar sequence
Representative Public ID F32D8.9 NCBI
Target Description F32D8.9 /REP_DB=WormBase Gene ID /WP=CE05788 /TR=Q19968 /GB=CAA98459.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073379 NCBI Caenorhabditis elegans SaPosin-like Protein family member (spp-16) (spp-16) mRNA, complete cds. 11/11 None
GENEFINDER00000041052 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10903321:10903803:-1 11/11 None
F32D8.9 ENSEMBL cdna:known chromosome:CEL140:V:10903118:10903848:-1 gene:F32D8.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041034 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10903320-10903803(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol spp-16
Ensembl F32D8.9
Entrez Gene 185207 Entrez gene
SwissProt Q19968 EMBL-EBI
WormBase CE05788 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98459 Hypothetical protein F32D8.9 [Caenorhabditis elegans] ref|NP_505780.1| SaPosin-like Protein family member (spp-16) [Caenorhabditis elegans] 3.0E-44
blast CAE64919 Hypothetical protein CBG09739 [Caenorhabditis briggsae] 3.0E-39
Sequence
Target Sequence 
>C. ELEGANS:179642_AT
tttttctatcttcattgtctgtagctcaatctccaatctcgtgtgctttctgtatggcag
gtctcgctcagatcaatcaacaagttatctcttccccggatatggaggcacaaatgggaa
ttcaagcttctcaaggatgcgatcagattccagtgaaacaaactcgcgaaacatgccgcg
gaagtttgaacacaaactttaacattttctattcgaatttcactggacaagccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCTATCTTCATTGTCTGTAGC 426 675 41 Antisense
TTGTCTGTAGCTCAATCTCCAATCT 370 707 55 Antisense
CAATCTCGTGTGCTTTCTGTATGGC 678 181 74 Antisense
CTTTCTGTATGGCAGGTCTCGCTCA 399 223 86 Antisense
CAGGTCTCGCTCAGATCAATCAACA 335 209 98 Antisense
CAATCAACAAGTTATCTCTTCCCCG 339 181 114 Antisense
ATCTCTTCCCCGGATATGGAGGCAC 403 31 127 Antisense
TTCAAGCTTCTCAAGGATGCGATCA 374 685 161 Antisense
GATGCGATCAGATTCCAGTGAAACA 602 413 176 Antisense
ACATGCCGCGGAAGTTTGAACACAA 436 107 211 Antisense
ATTCGAATTTCACTGGACAAGCCAA 461 5 251 Antisense
Sequence Source Affymetrix Proprietary Database