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[179641_at]

Description F15D4.6 /REP_DB=WormBase Gene ID /WP=CE09419 /TR=Q93514 /GB=CAB02489.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 36.1
(-3)
A 		85.9
(-0.2)
A 		78
(-0.7)
A 		144.4
(3)
A 		108
B 14.1
(-3)
A 		108
(3)
A 		89.6
(1.8)
A 		37.5
(-1.5)
A 		94
C 59.5
(-3)
A 		72.2
(-2.1)
A 		95.9
(-0.5)
A 		147.3
(3)
A 		88
avr 36.6
(-3) 		88.7
(1.3) 		87.8
(1.2) 		109.7
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 65.2
(-0.1)
A 		92.8
(2.4)
A 		32.5
(-3)
A 		99.9
(3)
A 		79.1
(1.1)
A 		60.5
(-0.5)
A 		67
B 38.6
(-2.7)
A 		91.3
(1.3)
A 		114.2
(3)
A 		34.7
(-3)
A 		80.3
(0.4)
A 		54
(-1.5)
A 		80
C 44.4
(-3)
A 		110.2
(3)
A 		63
(-1.3)
A 		101.2
(2.2)
A 		72.6
(-0.4)
A 		66.7
(-1)
A 		66
avr 49.4
(-3) 		98.1
(3) 		69.9
(-0.5) 		78.6
(0.6) 		77.3
(0.4) 		60.4
(-1.6) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 13.1
(-3)
A 		18.6
(1.1)
A 		20.4
(2.5)
A 		21.1
(3)
A 		8
B 4.5
(-3)
A 		26.7
(3)
A 		20.8
(1.4)
A 		8
(-2.1)
A 		22
C 19.7
(-3)
A 		20.8
(-2.5)
A 		33.4
(3)
A 		24.8
(-0.8)
A 		14
avr 12.4
(-3) 		22
(1.6) 		24.9
(3) 		18
(-0.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 12
(-1.9)
A 		33
(3)
A 		7.1
(-3)
A 		25.3
(1.2)
A 		23.9
(0.9)
A 		14.7
(-1.2)
A 		26
B 13.4
(-1.9)
A 		30.4
(2.4)
A 		27.7
(1.7)
A 		9.2
(-3)
A 		32.6
(3)
A 		20.1
(-0.2)
A 		23
C 16.5
(-2.8)
A 		33.6
(3)
A 		16
(-3)
A 		20.3
(-1.5)
A 		23.5
(-0.4)
A 		22.3
(-0.9)
A 		18
avr 14
(-3) 		32.3
(3) 		16.9
(-2) 		18.3
(-1.6) 		26.7
(1.2) 		19
(-1.4) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3604
Sequence Type Exemplar sequence
Representative Public ID F15D4.6 NCBI
Target Description F15D4.6 /REP_DB=WormBase Gene ID /WP=CE09419 /TR=Q93514 /GB=CAB02489.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064406 NCBI Caenorhabditis elegans F15D4.6 (F15D4.6) mRNA, complete cds. 11/11 None
SNAP00000038517 ENSEMBL cdna:SNAP chromosome:CEL140:II:13249091:13249778:1 10/11 None
GENEFINDER00000038522 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13249091:13249825:1 11/11 None
F15D4.6 ENSEMBL cdna:known chromosome:CEL140:II:13249104:13249750:1 gene:F15D4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13249087-13249775(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15D4.6
Entrez Gene 184531 Entrez gene
SwissProt Q93514 EMBL-EBI
WormBase CE36132 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02489 Hypothetical protein F15D4.6 [Caenorhabditis elegans] ref|NP_496807.2| F15D4.6 [Caenorhabditis elegans] 2.0E-29
Sequence
Target Sequence 
>C. ELEGANS:179641_AT
gaaatccaaatgccgagcttccgaatcagcacccaccagaatgtcccccaaatcgtcaag
atcgccttcaatacgctctcactatcaaacgcatcagaaatgagagtcagaagaccagga
tagagtcggcgaactacctgagagtcagaaatacccacgagaagagaacactcgaaaacg
atggttacaataccaacagcattgtcagaaaatcggtcaaaaaaatcgaaatggcaaaat
ttcagcaaatcgccaaaagaccaccgactgtggtcatcgaacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCCAAATGCCGAGCTTCCGAA 57 363 29 Antisense
AAATGCCGAGCTTCCGAATCAGCAC 1 119 36 Antisense
AAATCGTCAAGATCGCCTTCAATAC 127 119 78 Antisense
CTTCAATACGCTCTCACTATCAAAC 286 221 94 Antisense
CGCTCTCACTATCAAACGCATCAGA 39 255 102 Antisense
GAAGACCAGGATAGAGTCGGCGAAC 384 337 138 Antisense
GTCGGCGAACTACCTGAGAGTCAGA 431 471 153 Antisense
GAGAGTCAGAAATACCCACGAGAAG 86 395 168 Antisense
CAACAGCATTGTCAGAAAATCGGTC 171 187 222 Antisense
AAATCGCCAAAAGACCACCGACTGT 57 119 275 Antisense
CCACCGACTGTGGTCATCGAACAAG 71 275 289 Antisense
Sequence Source Affymetrix Proprietary Database