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[179640_at]

Description C05C9.2 /REP_DB=WormBase Gene ID /WP=CE02962 /TR=Q17655 /GB=CAA91970.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 85.4
(-0.2)
P 		69.2
(-1.3)
A 		43.2
(-3)
A 		133.8
(3)
P 		91
B 82.4
(0.6)
P 		55.3
(-2.7)
A 		52.5
(-3)
P 		102.6
(3)
P 		50
C 79.5
(-0.5)
P 		71.9
(-2.3)
A 		68.8
(-3)
P 		94.8
(3)
P 		26
avr 82.4
(-0) 		65.5
(-1.8) 		54.8
(-3) 		110.4
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 104.6
(3)
A 		61.4
(0.1)
M 		62.5
(0.2)
A 		43.6
(-1.1)
P 		56.1
(-0.2)
A 		14.5
(-3)
A 		90
B 115.4
(3)
P 		84.3
(0.4)
P 		91.3
(1)
M 		42.9
(-3)
A 		62.1
(-1.4)
A 		50.5
(-2.4)
P 		73
C 94.1
(3)
P 		51.7
(-0.5)
A 		57
(-0.1)
A 		68.1
(0.8)
A 		22.1
(-3)
P 		60.2
(0.2)
P 		72
avr 104.7
(3) 		65.8
(-0.7) 		70.3
(-0.3) 		51.5
(-2.1) 		46.8
(-2.5) 		41.7
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 31.1
(3)
P 		15
(-1.9)
A 		11.3
(-3)
A 		19.6
(-0.5)
P 		20
B 26.3
(3)
P 		13.7
(-2.4)
A 		12.2
(-3)
P 		21.9
(1.1)
P 		14
C 26.3
(3)
P 		20.7
(-0.3)
A 		24
(1.7)
P 		16
(-3)
P 		10
avr 27.9
(3) 		16.5
(-2.7) 		15.8
(-3) 		19.2
(-1.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 19.3
(2.2)
A 		21.8
(3)
M 		13.6
(0.3)
A 		11
(-0.5)
P 		16.9
(1.4)
A 		3.5
(-3)
A 		18
B 40.2
(3)
P 		28.1
(0.5)
P 		22.2
(-0.8)
M 		11.4
(-3)
A 		25.3
(-0.1)
A 		18.8
(-1.5)
P 		29
C 34.9
(3)
P 		15.8
(-1.1)
A 		14.5
(-1.4)
A 		13.7
(-1.6)
A 		7.1
(-3)
P 		20.2
(-0.2)
P 		28
avr 31.5
(3) 		21.9
(0) 		16.8
(-1.5) 		12
(-3) 		16.4
(-1.6) 		14.2
(-2.3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16905
Sequence Type Exemplar sequence
Representative Public ID C05C9.2 NCBI
Target Description C05C9.2 /REP_DB=WormBase Gene ID /WP=CE02962 /TR=Q17655 /GB=CAA91970.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077461(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077461 NCBI Caenorhabditis elegans C05C9.2 (C05C9.2) mRNA, complete cds. 10/11 None
GENEFINDER00000024342 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11152988:11157457:1 9/11 None
C05C9.2 ENSEMBL cdna:known chromosome:CEL140:X:11152985:11157565:1 gene:C05C9.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024337 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11156789-11157465(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05C9.2
Entrez Gene 181303 Entrez gene
SwissProt Q17655 EMBL-EBI
WormBase CE31405 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91970 Hypothetical protein C05C9.2 [Caenorhabditis elegans] ref|NP_509862.2| C05C9.2 [Caenorhabditis elegans] 1.0E-119
blast CAA91970 Hypothetical protein C05C9.2 [Caenorhabditis elegans] ref|NP_509862.2| C05C9.2 [Caenorhabditis elegans] 2.0E-87
blast CAE70693 Hypothetical protein CBG17415 [Caenorhabditis briggsae] 1.0E-41
blast CAE70693 Hypothetical protein CBG17415 [Caenorhabditis briggsae] 2.0E-36
blast CAE70694 Hypothetical protein CBG17417 [Caenorhabditis briggsae] 2.0E-22
blast CAE70694 Hypothetical protein CBG17417 [Caenorhabditis briggsae] 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:179640_AT
tcaggactcccaaaacttcatcgaagttcctctgccatctctgccagaagaatttcaatc
actgacgctgggaagtaagaaacgtgcaaaacgacaaagcacaaaagacgccgatactac
aatgatatttttcgataaccctgtgtgggatgacgcaaaatttcgtcaggagctactcga
ttctgacgaggaaaggtactcaataggggatgcgccttacatcatggacgacgacgacac
tcttgacgacatacttagggacacttaccacgaatcagcttcaaatccaatagagcatta
tcaaactgatgaaacaatcctttcgagtgacgatgaaaacgactacagcacactggattt
gcgacaacaagccaatggctcattccgttcgccaaaattgctggttcccagtcttcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGGACTCCCAAAACTTCATCGAA 647 621 18 Antisense
CCTCTGCCATCTCTGCCAGAAGAAT 581 267 46 Antisense
GAATTTCAATCACTGACGCTGGGAA 495 325 67 Antisense
GATATTTTTCGATAACCCTGTGTGG 227 427 141 Antisense
TTTCGTCAGGAGCTACTCGATTCTG 86 669 178 Antisense
ATGCGCCTTACATCATGGACGACGA 576 41 227 Antisense
ACGACACTCTTGACGACATACTTAG 242 93 251 Antisense
TAGGGACACTTACCACGAATCAGCT 398 651 273 Antisense
GACTACAGCACACTGGATTTGCGAC 654 373 358 Antisense
ATGGCTCATTCCGTTCGCCAAAATT 470 49 392 Antisense
AAATTGCTGGTTCCCAGTCTTCGAT 403 115 412 Antisense
Sequence Source Affymetrix Proprietary Database