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[179639_at]

Description K08E3.2 /REP_DB=WormBase Gene ID /WP=CE18865 /TR=Q9XUT1 /GB=CAB04590.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 34      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 12.6
(-1.2)
A 		6.6
(-3)
A 		8.9
(-2.3)
A 		26.8
(3)
A 		20
B 3.1
(-3)
A 		34.7
(1.9)
A 		41.9
(3)
A 		28.6
(0.9)
A 		39
C 7.1
(-2)
A 		32.6
(3)
A 		2.2
(-3)
A 		19.9
(0.5)
A 		30
avr 7.6
(-3) 		24.6
(2.8) 		17.7
(0.5) 		25.1
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 6.2
(-2)
A 		4.2
(-2.5)
A 		5.3
(-2.2)
A 		1.8
(-3)
A 		2.6
(-2.8)
A 		29
(3)
A 		27
B 10.8
(1.9)
A 		3.7
(-2.4)
A 		2.8
(-3)
A 		3.9
(-2.3)
A 		7.9
(0.2)
A 		12.5
(3)
A 		10
C 2.7
(-2.7)
A 		3.5
(-2.4)
A 		2
(-2.9)
A 		3.7
(-2.3)
A 		1.8
(-3)
A 		18
(3)
A 		16
avr 6.6
(-1.7) 		3.8
(-2.7) 		3.4
(-2.9) 		3.1
(-3) 		4.1
(-2.6) 		19.8
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.6
(3)
A 		1.4
(-3)
A 		2.3
(-1.3)
A 		3.9
(1.7)
A 		3
B 1
(-3)
A 		8.6
(2.2)
A 		9.7
(3)
A 		6.1
(0.5)
A 		9
C 2.4
(-1.9)
A 		9.4
(3)
A 		0.8
(-3)
A 		3.3
(-1.3)
A 		9
avr 2.7
(-3) 		6.5
(3) 		4.3
(-0.5) 		4.4
(-0.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.2
(-2.4)
A 		1.5
(-2.1)
A 		1.2
(-2.4)
A 		0.5
(-3)
A 		0.8
(-2.7)
A 		7.1
(3)
A 		7
B 3.8
(1.7)
A 		1.2
(-2.3)
A 		0.7
(-3)
A 		1
(-2.6)
A 		3.2
(0.8)
A 		4.7
(3)
A 		4
C 1
(-2.5)
A 		1.1
(-2.3)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		0.6
(-2.9)
A 		6
(3)
A 		6
avr 2
(-1.5) 		1.3
(-2.3) 		0.8
(-2.9) 		0.7
(-3) 		1.5
(-2.1) 		5.9
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6113
Sequence Type Exemplar sequence
Representative Public ID K08E3.2 NCBI
Target Description K08E3.2 /REP_DB=WormBase Gene ID /WP=CE18865 /TR=Q9XUT1 /GB=CAB04590.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067436(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067436 NCBI Caenorhabditis elegans K08E3.2 (K08E3.2) mRNA, complete cds. 11/11 None
SNAP00000031960 ENSEMBL cdna:SNAP chromosome:CEL140:III:13746988:13750359:-1 11/11 None
GENEFINDER00000031972 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13746988:13748202:-1 11/11 None
K08E3.2 ENSEMBL cdna:known chromosome:CEL140:III:13746988:13748202:-1 gene:K08E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13746983-13748198(-) 66.55 100.0
Public Domain and Genome References
Gene Title
Ensembl K08E3.2
Entrez Gene 187158 Entrez gene
SwissProt Q9XUT1 EMBL-EBI
WormBase CE18865 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04590 Hypothetical protein K08E3.2 [Caenorhabditis elegans] ref|NP_499837.1| K08E3.2 [Caenorhabditis elegans] 5.0E-46
blast CAB04590 Hypothetical protein K08E3.2 [Caenorhabditis elegans] ref|NP_499837.1| K08E3.2 [Caenorhabditis elegans] 7.0E-46
blast CAB04590 Hypothetical protein K08E3.2 [Caenorhabditis elegans] ref|NP_499837.1| K08E3.2 [Caenorhabditis elegans] 2.0E-45
blast CAE71365 Hypothetical protein CBG18269 [Caenorhabditis briggsae] 4.0E-25
blast CAE71365 Hypothetical protein CBG18269 [Caenorhabditis briggsae] 5.0E-25
blast CAE71365 Hypothetical protein CBG18269 [Caenorhabditis briggsae] 1.0E-24
blast CAB04635 Hypothetical protein R08H2.10 [Caenorhabditis elegans] ref|NP_506815.1| R08H2.10 [Caenorhabditis elegans] 3.0E-20
blast CAB04635 Hypothetical protein R08H2.10 [Caenorhabditis elegans] ref|NP_506815.1| R08H2.10 [Caenorhabditis elegans] 4.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 9.4E-35
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 9.4E-35
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.8E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.6E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.9E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 6.9E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 9.2E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.9E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 0.0025
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 9.4E-35
Sequence
Target Sequence 
>C. ELEGANS:179639_AT
cgcacccgagctgattttcgagaggactatcaccagccagaagaagctactcttgaaaaa
cttgaccgctaaaaaggtcatgttcaagatcaaatgttccagcgtaaacgtatatttcat
caatccagtttttggaaaaattgatcctatgtccactgccgaggtcacgattactcaccg
tccgtcagagaaacaagaagataagctggtgattgtgccagctaagatgaaaggaaaaga
gattgaaatggcacaagcgttcaagcaaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCACCCGAGCTGATTTTCGAGAGG 430 253 528 Antisense
TTTCGAGAGGACTATCACCAGCCAG 505 669 543 Antisense
CACCAGCCAGAAGAAGCTACTCTTG 133 203 558 Antisense
GCTACTCTTGAAAAACTTGACCGCT 676 301 573 Antisense
GCTAAAAAGGTCATGTTCAAGATCA 582 299 595 Antisense
ATCAAATGTTCCAGCGTAAACGTAT 417 25 616 Antisense
ACGTATATTTCATCAATCCAGTTTT 526 91 635 Antisense
AAAAATTGATCCTATGTCCACTGCC 449 129 663 Antisense
ATTACTCACCGTCCGTCAGAGAAAC 445 11 697 Antisense
GGTGATTGTGCCAGCTAAGATGAAA 43 501 735 Antisense
ATGGCACAAGCGTTCAAGCAAATCA 182 53 775 Antisense
Sequence Source Affymetrix Proprietary Database