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[179638_at]

Description ZC412.5 /REP_DB=WormBase Gene ID /WP=CE15219 /TR=Q23309 /GB=CAB01532.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 17      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 5.3
(-3)
A 		5.2
(-3)
A 		14.3
(-2.1)
A 		63.4
(3)
A 		58
B 4.2
(-3)
A 		10.9
(0.5)
A 		15.6
(3)
A 		7.8
(-1.1)
A 		11
C 4.2
(-3)
A 		19.8
(0.1)
A 		5.9
(-2.7)
A 		34.2
(3)
A 		30
avr 4.6
(-3) 		12
(-1.5) 		11.9
(-1.6) 		35.1
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 9.7
(-1)
A 		6.5
(-2.2)
A 		4.4
(-3)
A 		8.4
(-1.5)
A 		9
(-1.2)
A 		20.1
(3)
A 		16
B 5.3
(-3)
A 		9.2
(1.9)
A 		10.1
(3)
A 		7.4
(-0.4)
A 		9.3
(2)
A 		9.6
(2.4)
A 		5
C 4.7
(-3)
A 		10.4
(-2.1)
A 		4.4
(-3)
A 		5.4
(-2.9)
A 		8.2
(-2.5)
A 		46.5
(3)
A 		42
avr 6.6
(-2.9) 		8.7
(-2.2) 		6.3
(-3) 		7.1
(-2.7) 		8.8
(-2.2) 		25.4
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.9
(-2.4)
A 		1.1
(-3)
A 		3.7
(-1.1)
A 		9.3
(3)
A 		8
B 1.3
(-3)
A 		2.7
(0.7)
A 		3.6
(3)
A 		1.7
(-2)
A 		2
C 1.4
(-3)
A 		5.7
(2.9)
A 		2.1
(-2)
A 		5.8
(3)
A 		4
avr 1.5
(-3) 		3.2
(-0.5) 		3.1
(-0.7) 		5.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.8
(-1.7)
A 		2.3
(-0.9)
A 		0.9
(-3)
A 		2.1
(-1.2)
A 		2.7
(-0.3)
A 		4.9
(3)
A 		4
B 1.8
(-3)
A 		3.1
(0.9)
A 		2.5
(-0.9)
A 		1.9
(-2.7)
A 		3.8
(3)
A 		3.6
(2.4)
A 		2
C 1.7
(-2.8)
A 		3.2
(-2.1)
A 		1.1
(-3)
A 		1.1
(-3)
A 		2.7
(-2.3)
A 		15.6
(3)
A 		15
avr 1.8
(-2.7) 		2.9
(-1.7) 		1.5
(-3) 		1.7
(-2.8) 		3.1
(-1.5) 		8
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179638_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13042
Sequence Type Exemplar sequence
Representative Public ID ZC412.5 NCBI
Target Description ZC412.5 /REP_DB=WormBase Gene ID /WP=CE15219 /TR=Q23309 /GB=CAB01532.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074262 NCBI Caenorhabditis elegans ZC412.5 (ZC412.5) mRNA, complete cds. 11/11 None
SNAP00000018095 ENSEMBL cdna:SNAP chromosome:CEL140:V:14877249:14878017:-1 9/11 None
GENEFINDER00000018102 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14874351:14879241:-1 9/11 None
ZC412.5 ENSEMBL cdna:known chromosome:CEL140:V:14876787:14878017:-1 gene:ZC412.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14876786-14878017(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC412.5
Entrez Gene 191161 Entrez gene
SwissProt Q23309 EMBL-EBI
WormBase CE15219 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01532 Hypothetical protein ZC412.5 [Caenorhabditis elegans] ref|NP_506663.1| ZC412.5 [Caenorhabditis elegans] 2.0E-82
blast CAB01532 Hypothetical protein ZC412.5 [Caenorhabditis elegans] ref|NP_506663.1| ZC412.5 [Caenorhabditis elegans] 4.0E-67
blast CAB01532 Hypothetical protein ZC412.5 [Caenorhabditis elegans] ref|NP_506663.1| ZC412.5 [Caenorhabditis elegans] 2.0E-66
blast CAA80149 Hypothetical protein ZK512.8 [Caenorhabditis elegans] ref|NP_499027.1| ZK512.8 [Caenorhabditis elegans] sp|P34646|YOQ8_CAEEL Hypothetical protein ZK512.8 in chromosome III 4.0E-58
blast CAA80149 Hypothetical protein ZK512.8 [Caenorhabditis elegans] ref|NP_499027.1| ZK512.8 [Caenorhabditis elegans] sp|P34646|YOQ8_CAEEL Hypothetical protein ZK512.8 in chromosome III 1.0E-43
blast CAA80149 Hypothetical protein ZK512.8 [Caenorhabditis elegans] ref|NP_499027.1| ZK512.8 [Caenorhabditis elegans] sp|P34646|YOQ8_CAEEL Hypothetical protein ZK512.8 in chromosome III 6.0E-43
blast CAE62663 Hypothetical protein CBG06801 [Caenorhabditis briggsae] 2.0E-32
Sequence
Target Sequence 
>C. ELEGANS:179638_AT
ctccccggaacgatagcactcgtaagcatcgtaaatctcgttcaatcaaggatgatcaac
actatccgccagtgtcttttgttggagtagagtctgttggtattatcgagtgtccaggga
gcaatcacttatcgctggcttcaattccaacaaccgaattcaaaatcccggatgaacttg
cactttgggtgcgtggtcgcatcgacaatgtcgctccgaaacatccgtgcgatcgtcgtg
gtcaacaaccattggcgaagaaggagatttcgatgaattcgtctcgttccaacagctcct
ttccagctagaagtccagctatcatgacattgatgggtggagttccagaggcagaaaaag
agtacaatgttggaaaggatggacttctcaaagtttcaaaaatgatggaaggtggaaaaa
gatacgaagtctccgccaacgaccgcttcactgtcttccaacaatcagctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCCGGAACGATAGCACTCGTAA 278 231 17 Antisense
CTATCCGCCAGTGTCTTTTGTTGGA 172 225 78 Antisense
GGAGCAATCACTTATCGCTGGCTTC 672 519 134 Antisense
AAATCCCGGATGAACTTGCACTTTG 36 119 179 Antisense
TGCACTTTGGGTGCGTGGTCGCATC 285 577 195 Antisense
GGTCGCATCGACAATGTCGCTCCGA 595 501 211 Antisense
CCGAAACATCCGTGCGATCGTCGTG 303 263 232 Antisense
TCGATGAATTCGTCTCGTTCCAACA 109 603 286 Antisense
GCTCCTTTCCAGCTAGAAGTCCAGC 521 291 311 Antisense
AAAAGATACGAAGTCTCCGCCAACG 43 133 433 Antisense
TCACTGTCTTCCAACAATCAGCTGG 445 627 464 Antisense
Sequence Source Affymetrix Proprietary Database