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[179637_at]

Description C49C3.7 /REP_DB=WormBase Gene ID /WP=CE19746 /TR=Q9XUF2 /GB=CAB05166.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 91      6grp_total > 88      4grp_total > 05      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 166.4
(3)
P 		135.1
(-3)
P 		157
(1.2)
P 		153.4
(0.5)
P 		31
B 160
(-2.1)
P 		142.5
(-3)
P 		147.5
(-2.7)
P 		253.2
(3)
P 		111
C 180.3
(-0.7)
P 		134.9
(-3)
P 		172.5
(-1.1)
P 		253.1
(3)
P 		118
avr 168.9
(-0.7) 		137.5
(-3) 		159
(-1.4) 		219.9
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 139.8
(-3)
P 		169.3
(-2.4)
P 		195.7
(-1.8)
P 		139.4
(-3)
P 		222.2
(-1.3)
P 		425.3
(3)
P 		286
B 193.3
(-1.4)
P 		133
(-3)
P 		163.4
(-2.2)
P 		186.1
(-1.6)
P 		313
(1.7)
P 		361.8
(3)
P 		229
C 172.1
(-1.8)
P 		124.4
(-3)
P 		190.4
(-1.4)
P 		187.2
(-1.5)
P 		287.6
(0.9)
P 		373
(3)
P 		249
avr 168.4
(-2.4) 		142.2
(-3) 		183.2
(-2) 		170.9
(-2.3) 		274.3
(0.2) 		386.7
(3) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 60.6
(3)
P 		29.3
(-1.9)
P 		41
(-0.1)
P 		22.5
(-3)
P 		38
B 51
(2.1)
P 		35.2
(-2.7)
P 		34.2
(-3)
P 		54
(3)
P 		20
C 59.7
(2.9)
P 		38.8
(-3)
P 		60.1
(3)
P 		42.7
(-1.9)
P 		21
avr 57.1
(3) 		34.4
(-3) 		45.1
(-0.2) 		39.7
(-1.6) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 25.8
(-3)
P 		60.2
(-0.3)
P 		42.6
(-1.7)
P 		35.3
(-2.3)
P 		67
(0.2)
P 		103.6
(3)
P 		78
B 67.2
(-1.3)
P 		44.3
(-2.7)
P 		39.7
(-3)
P 		49.3
(-2.4)
P 		127.2
(2.5)
P 		134.9
(3)
P 		95
C 63.8
(-1.2)
P 		38
(-3)
P 		48.5
(-2.3)
P 		37.6
(-3)
P 		93.1
(0.8)
P 		124.9
(3)
P 		87
avr 52.3
(-2.1) 		47.5
(-2.5) 		43.6
(-2.8) 		40.7
(-3) 		95.8
(1.1) 		121.1
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9057
Sequence Type Exemplar sequence
Representative Public ID C49C3.7 NCBI
Target Description C49C3.7 /REP_DB=WormBase Gene ID /WP=CE19746 /TR=Q9XUF2 /GB=CAB05166.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070682 NCBI Caenorhabditis elegans C49C3.7 (C49C3.7) mRNA, complete cds. 11/11 None
SNAP00000040197 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17332534:17333550:1 11/11 None
GENEFINDER00000040215 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17332534:17336601:1 11/11 None
C49C3.7 ENSEMBL cdna:known chromosome:CEL140:IV:17332528:17333518:1 gene:C49C3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17332539-17333420(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49C3.7
Entrez Gene 178516 Entrez gene
SwissProt Q9XUF2 EMBL-EBI
WormBase CE19746 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05166 Hypothetical protein C49C3.7 [Caenorhabditis elegans] ref|NP_503083.1| C49C3.7 [Caenorhabditis elegans] 1.0E-152
blast CAB05166 Hypothetical protein C49C3.7 [Caenorhabditis elegans] ref|NP_503083.1| C49C3.7 [Caenorhabditis elegans] 1.0E-151
blast CAB05161 Hypothetical protein C49C3.8 [Caenorhabditis elegans] ref|NP_503085.1| C49C3.8 [Caenorhabditis elegans] 1.0E-138
blast CAB05167 Hypothetical protein C49C3.15 [Caenorhabditis elegans] ref|NP_503084.2| C49C3.15 [Caenorhabditis elegans] 1.0E-112
blast CAB05160 Hypothetical protein C49C3.6 [Caenorhabditis elegans] ref|NP_503082.1| C49C3.6 [Caenorhabditis elegans] 2.0E-60
blast CAB05160 Hypothetical protein C49C3.6 [Caenorhabditis elegans] ref|NP_503082.1| C49C3.6 [Caenorhabditis elegans] 8.0E-60
Sequence
Target Sequence 
>C. ELEGANS:179637_AT
gaaatccgaaattgacagcgctgaagaggagtcgaagttctacaaaaattgtttcgagac
tactgctgctgaaaatgttgaacttttaaaagtcaccgaccaactcaagaaggagctgga
attcttgaaagcacaacaaggaaatcagtttaaagttgatatgaagatcaaatccgaaat
ggagagcgctacacaatctaatttgattctgctacgagaaaaagaaatgtggaaagatcg
atttaatgatgtgctctctgaaaagcttgctctaagtgcacgaattagaaatgtgatcgg
cgacagatcggaatccgtggaagtacccaacgattcaaatagagacatttgggaattgcg
agaagatttggaaatggagagaagtgcacgtagaaaggctgaagaagagctgaaaattct
aaaaatgacttcaagtcgtggatctatgcatatcagccgagactccaccaaccaaacacc
caatgaaattcttctgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCCGAAATTGACAGCGCTGAA 49 363 312 Antisense
ATTGTTTCGAGACTACTGCTGCTGA 696 3 359 Antisense
CACCGACCAACTCAAGAAGGAGCTG 405 199 405 Antisense
GGAGAGCGCTACACAATCTAATTTG 369 519 492 Antisense
TCGATTTAATGATGTGCTCTCTGAA 642 603 549 Antisense
CTGAAAAGCTTGCTCTAAGTGCACG 708 233 569 Antisense
CGGCGACAGATCGGAATCCGTGGAA 211 241 609 Antisense
ATCCGTGGAAGTACCCAACGATTCA 159 37 624 Antisense
GACTTCAAGTCGTGGATCTATGCAT 496 371 738 Antisense
CTATGCATATCAGCCGAGACTCCAC 231 225 755 Antisense
AACACCCAATGAAATTCTTCTGAGC 246 135 786 Antisense
Sequence Source Affymetrix Proprietary Database