[Home] | [Total List]

[179636_at]

Description D2013.6 /REP_DB=WormBase Gene ID /WP=CE00931 /TR=Q18966 /GB=CAA87772.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 26      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 40      6grp_total > 25      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 458
1 2 3 4 range
A 765.7
(2.2)
P 		809.4
(3)
P 		618.1
(-0.5)
P 		478.4
(-3)
P 		331
B 901.9
(3)
P 		771.4
(1.3)
P 		656.8
(-0.2)
P 		444.3
(-3)
P 		458
C 883.1
(3)
P 		806.6
(2)
P 		708.6
(0.6)
P 		444.7
(-3)
P 		438
avr 850.2
(3) 		795.8
(2.2) 		661.2
(0.1) 		455.8
(-3) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 732
(2)
P 		780
(3)
P 		592.3
(-1)
P 		536.5
(-2.1)
P 		496.3
(-3)
P 		555.2
(-1.8)
P 		284
B 859.6
(3)
P 		790.8
(2)
P 		665.6
(0.1)
P 		547.2
(-1.7)
P 		456.6
(-3)
P 		549.9
(-1.6)
P 		403
C 798.5
(3)
P 		707.4
(1.6)
P 		664.2
(1)
P 		402
(-3)
P 		573.6
(-0.4)
P 		572.2
(-0.4)
P 		397
avr 796.7
(3) 		759.4
(2.3) 		640.7
(-0.1) 		495.2
(-3) 		508.8
(-2.7) 		559.1
(-1.7) 		302
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 278.8
(3)
P 		175.7
(0)
P 		161.6
(-0.4)
P 		70
(-3)
P 		209
B 287.6
(3)
P 		190.5
(-0)
P 		152.2
(-1.2)
P 		94.7
(-3)
P 		193
C 292.3
(3)
P 		231.9
(1.3)
P 		247
(1.7)
P 		75
(-3)
P 		217
avr 286.2
(3) 		199.4
(0.5) 		186.9
(0.1) 		79.9
(-3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 134.9
(-2.8)
P 		277.4
(3)
P 		129
(-3)
P 		136.1
(-2.7)
P 		149.8
(-2.2)
P 		135.2
(-2.7)
P 		148
B 299.1
(3)
P 		263.2
(1.6)
P 		161.6
(-2.4)
P 		144.9
(-3)
P 		185.5
(-1.4)
P 		205.1
(-0.7)
P 		154
C 296
(3)
P 		215.8
(0.8)
P 		169.1
(-0.5)
P 		80.8
(-3)
P 		185.6
(-0.1)
P 		191.5
(0.1)
P 		215
avr 243.3
(2.6) 		252.1
(3) 		153.2
(-1.5) 		120.6
(-3) 		173.6
(-0.6) 		177.3
(-0.4) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2908
Sequence Type Exemplar sequence
Representative Public ID D2013.6 NCBI
Target Description D2013.6 /REP_DB=WormBase Gene ID /WP=CE00931 /TR=Q18966 /GB=CAA87772.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063586(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063586 NCBI Caenorhabditis elegans D2013.6 (D2013.6) mRNA, complete cds. 11/11 None
SNAP00000019827 ENSEMBL cdna:SNAP chromosome:CEL140:II:9329686:9330989:1 11/11 None
GENEFINDER00000019833 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9329686:9330989:1 11/11 None
D2013.6 ENSEMBL cdna:known chromosome:CEL140:II:9329686:9330989:1 gene:D2013.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9329682-9330986(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2013.6
Entrez Gene 174477 Entrez gene
SwissProt Q18966 EMBL-EBI
WormBase CE00931 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87772 Hypothetical protein D2013.6 [Caenorhabditis elegans] ref|NP_495987.1| D2013.6 [Caenorhabditis elegans] 1.0E-129
blast CAE72909 Hypothetical protein CBG20227 [Caenorhabditis briggsae] 1.0E-119
blast CAE68452 Hypothetical protein CBG14242 [Caenorhabditis briggsae] 5.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR004182 EMBL-EBI GRAM domain 1.6E-15
Sequence
Target Sequence 
>C. ELEGANS:179636_AT
gaaggacgtcgaacgggaaccatctacctcacatcacacagaatcattttcatgccagac
cctggagattggctgaaatcatttgaaattccattcaacagtatgcaagatgttaactta
aaccagccgattttcggagccaactacctatgtggaatcgcctcggctgttcaaggagga
caaatgcgcggagaggttaaatggagaatgacattcaacagagggggatgtattgaattc
gggcaatctctattgcaagcagtcgaaagagctgttcgaatgagaccagagaatgctcca
cctgcatattctccaccaattggagatttctactctgcaccgccagcttattatcagccg
tcgccggatcaaggaccaaatggtttcaatccaaccaccgattcgttcccagatcagccg
aacccatcacgagttttcatgagctcagcaccaccaccatatccaggaatcggaccagaa
cgcggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGACGTCGAACGGGAACCATCT 162 335 136 Antisense
CATCTACCTCACATCACACAGAATC 407 213 156 Antisense
ATCATTTTCATGCCAGACCCTGGAG 374 29 178 Antisense
GATTTTCGGAGCCAACTACCTATGT 601 429 264 Antisense
TATGTGGAATCGCCTCGGCTGTTCA 124 655 284 Antisense
TGAGACCAGAGAATGCTCCACCTGC 85 569 416 Antisense
AATTGGAGATTTCTACTCTGCACCG 471 179 453 Antisense
TTATTATCAGCCGTCGCCGGATCAA 601 677 483 Antisense
CCGAACCCATCACGAGTTTTCATGA 374 263 553 Antisense
GAGTTTTCATGAGCTCAGCACCACC 106 399 566 Antisense
CCAGGAATCGGACCAGAACGCGGCC 310 269 598 Antisense
Sequence Source Affymetrix Proprietary Database