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[179635_at]

Description F07A5.4 /REP_DB=WormBase Gene ID /WP=CE05557 /TR=Q19137 /GB=CAA96616.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 47      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 100.5
(3)
P 		25
(-2.8)
A 		52
(-0.7)
A 		22.8
(-3)
A 		78
B 118.1
(3)
P 		55.9
(-2.2)
A 		46.4
(-3)
A 		50.1
(-2.7)
A 		72
C 81.6
(2.7)
A 		63.8
(0.7)
A 		30.4
(-3)
A 		84.3
(3)
A 		54
avr 100.1
(3) 		48.2
(-2.4) 		42.9
(-3) 		52.4
(-2) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 53.6
(3)
A 		43.2
(0.2)
A 		31.7
(-3)
A 		53.2
(2.9)
A 		39.5
(-0.9)
A 		36.3
(-1.7)
A 		22
B 62.3
(1.5)
A 		78.8
(2.9)
P 		79.9
(3)
A 		76.5
(2.7)
A 		43.1
(-0.2)
A 		9.9
(-3)
A 		70
C 78.9
(3)
P 		72
(2.4)
A 		64.1
(1.7)
A 		11.2
(-3)
A 		11.7
(-3)
A 		38.1
(-0.6)
A 		68
avr 64.9
(3) 		64.7
(3) 		58.6
(2) 		47
(0.1) 		31.4
(-2.5) 		28.1
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 36.6
(3)
P 		5.4
(-2.6)
A 		13.6
(-1.1)
A 		3.3
(-3)
A 		33
B 37.7
(3)
P 		13.8
(-2.3)
A 		10.8
(-3)
A 		10.7
(-3)
A 		27
C 27
(3)
A 		18.4
(-0.1)
A 		10.6
(-3)
A 		14.2
(-1.7)
A 		16
avr 33.8
(3) 		12.5
(-2.2) 		11.7
(-2.4) 		9.4
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 9.9
(-0.9)
A 		15.4
(3)
A 		6.9
(-3)
A 		13.5
(1.7)
A 		11.9
(0.5)
A 		8.8
(-1.7)
A 		9
B 21.7
(1.8)
A 		26.2
(3)
P 		19.4
(1.2)
A 		20.3
(1.4)
A 		17.5
(0.7)
A 		3.7
(-3)
A 		23
C 29.3
(3)
P 		22
(1.4)
A 		16.3
(0.1)
A 		2.3
(-3)
A 		3.8
(-2.7)
A 		12.8
(-0.7)
A 		27
avr 20.3
(2.6) 		21.2
(3) 		14.2
(-0.3) 		12
(-1.3) 		11.1
(-1.7) 		8.4
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179635_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2359
Sequence Type Exemplar sequence
Representative Public ID F07A5.4 NCBI
Target Description F07A5.4 /REP_DB=WormBase Gene ID /WP=CE05557 /TR=Q19137 /GB=CAA96616.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059681(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059681 NCBI Caenorhabditis elegans F07A5.4 (F07A5.4) mRNA, complete cds. 10/11 None
F07A5.4 ENSEMBL cdna:known chromosome:CEL140:I:7365310:7367230:-1 gene:F07A5.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034784 6/11 Cross Hyb Matching Probes None
GENEFINDER00000034797 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7365917-7367127(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07A5.4
Entrez Gene 172490 Entrez gene
SwissProt Q19137 EMBL-EBI
WormBase CE28905 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96616 Hypothetical protein F07A5.4 [Caenorhabditis elegans] ref|NP_492082.1| F07A5.4 [Caenorhabditis elegans] 1.0E-150
blast CAE66602 Hypothetical protein CBG11927 [Caenorhabditis briggsae] 6.0E-84
Sequence
Target Sequence 
>C. ELEGANS:179635_AT
gaacttaactcaaatcggctaccaaagactgacgatgactcgacaatttttatgccaatt
tatgcacaagtttcagttaaatgctccgccgaagtttcattagggaagccggtttttatt
ggtgaacgaaaaaattcagaaggatgtgcttatttggatggtggtcactggcatgtttgt
gaaatgtcacatggatacacgatgctctcttttaaaggaaatcgaagattgaatagctca
gaaacacgggcggtacaatttctaccgtatccgtttgatggtacttctatttttaaagtc
ccgtttggcaaatttagaagacccattccaaaaacgtctcaaactatattttcaggaacc
gataatatggtctacaacaacacaatgtactacagcgagaacgatcgattgatttcatac
aatttgaaaactgaaaaatcgaactatatacctttgagaacttctttggtactgacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTAACTCAAATCGGCTACCAA 554 349 133 Antisense
GGCTACCAAAGACTGACGATGACTC 303 537 149 Antisense
CAAGTTTCAGTTAAATGCTCCGCCG 131 185 199 Antisense
AATGCTCCGCCGAAGTTTCATTAGG 604 165 212 Antisense
GGATGTGCTTATTTGGATGGTGGTC 365 515 274 Antisense
GATGGTGGTCACTGGCATGTTTGTG 258 407 289 Antisense
ATGGATACACGATGCTCTCTTTTAA 709 51 323 Antisense
ATAGCTCAGAAACACGGGCGGTACA 639 17 365 Antisense
ACAATTTCTACCGTATCCGTTTGAT 26 115 387 Antisense
GAAGACCCATTCCAAAAACGTCTCA 576 337 449 Antisense
TTGAGAACTTCTTTGGTACTGACCA 585 703 586 Antisense
Sequence Source Affymetrix Proprietary Database