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[179633_at] 7TM receptor, sre family

Description W07G1.2 /REP_DB=WormBase Gene ID /WP=CE24036 /TR=Q9XUK3 /GB=CAB04934.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 52      6grp_cgc > 12      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 39.2
(0.1)
A 		63.5
(3)
A 		34.5
(-0.5)
A 		13.8
(-3)
A 		50
B 38.5
(3)
A 		15
(-3)
A 		37.7
(2.8)
A 		28.8
(0.5)
A 		24
C 61.7
(0.7)
A 		83.1
(3)
A 		38.8
(-1.8)
A 		28
(-3)
A 		55
avr 46.5
(1.5) 		53.9
(3) 		37
(-0.3) 		23.5
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 80.6
(3)
A 		16.7
(-2.5)
A 		39.5
(-0.5)
A 		21
(-2.1)
A 		23
(-2)
A 		11.1
(-3)
A 		70
B 23.4
(-0.4)
A 		27.3
(0.2)
A 		33.3
(1.1)
A 		25.7
(-0.1)
A 		45.2
(3)
A 		7.2
(-3)
A 		38
C 45.7
(1.6)
A 		56.1
(3)
A 		11
(-3)
A 		13.1
(-2.7)
A 		30.5
(-0.4)
A 		23.9
(-1.3)
A 		45
avr 49.9
(3) 		33.4
(0.2) 		27.9
(-0.7) 		19.9
(-2) 		32.9
(0.2) 		14.1
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 14.3
(3)
A 		13.8
(2.8)
A 		9
(0.4)
A 		2
(-3)
A 		12
B 12.3
(3)
A 		3.7
(-3)
A 		8.7
(0.5)
A 		6.1
(-1.3)
A 		9
C 20.4
(1.9)
A 		23.9
(3)
A 		13.5
(-0.3)
A 		4.7
(-3)
A 		19
avr 15.7
(3) 		13.8
(2) 		10.4
(0.2) 		4.3
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 14.8
(3)
A 		5.9
(-1.4)
A 		8.6
(-0.1)
A 		5.3
(-1.7)
A 		7
(-0.9)
A 		2.7
(-3)
A 		12
B 8.1
(-0.9)
A 		9.1
(-0.5)
A 		8.1
(-0.9)
A 		6.8
(-1.4)
A 		18.3
(3)
A 		2.7
(-3)
A 		16
C 16.9
(2.9)
A 		17.1
(3)
A 		2.8
(-2.9)
A 		2.6
(-3)
A 		9.9
(0)
A 		8
(-0.8)
A 		15
avr 13.3
(3) 		10.7
(1.2) 		6.5
(-1.6) 		4.9
(-2.7) 		11.7
(1.9) 		4.5
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179633_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3335
Sequence Type Exemplar sequence
Representative Public ID W07G1.2 NCBI
Target Description W07G1.2 /REP_DB=WormBase Gene ID /WP=CE24036 /TR=Q9XUK3 /GB=CAB04934.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064517 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-44) (sre-44) mRNA, complete cds. 11/11 None
SNAP00000025660 ENSEMBL cdna:SNAP chromosome:CEL140:II:13949747:13951761:1 9/11 None
W07G1.2 ENSEMBL cdna:known chromosome:CEL140:II:13949482:13951761:1 gene:W07G1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13949478-13951758(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-44
Ensembl W07G1.2
Entrez Gene 189279 Entrez gene
SwissProt Q9XUK3 EMBL-EBI
WormBase CE24036 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04934 Hypothetical protein W07G1.2 [Caenorhabditis elegans] ref|NP_496918.1| Serpentine Receptor, class E (epsilon) family member (sre-44) [Caenorhabditis elegans] 0.0
blast CAE73318 Hypothetical protein CBG20745 [Caenorhabditis briggsae] 1.0E-140
blast CAB04934 Hypothetical protein W07G1.2 [Caenorhabditis elegans] ref|NP_496918.1| Serpentine Receptor, class E (epsilon) family member (sre-44) [Caenorhabditis elegans] 1.0E-108
blast CAB05740 Hypothetical protein F54F11.3 [Caenorhabditis elegans] ref|NP_496843.2| Serpentine Receptor, class E (epsilon) family member (sre-45) [Caenorhabditis elegans] sp|O02275|SRE45_CAEEL Serpentine receptor class epsilon-45 (Protein sre-45) 1.0E-72
blast CAE73318 Hypothetical protein CBG20745 [Caenorhabditis briggsae] 2.0E-66
blast CAB05740 Hypothetical protein F54F11.3 [Caenorhabditis elegans] ref|NP_496843.2| Serpentine Receptor, class E (epsilon) family member (sre-45) [Caenorhabditis elegans] sp|O02275|SRE45_CAEEL Serpentine receptor class epsilon-45 (Protein sre-45) 2.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 5.0E-24
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 2.3E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496918.1 6 32-54,67-89,124-146,167-189,193-215,256-278
W07G1.2 6 32-54,67-89,124-146,167-189,193-215,256-278
SNAP00000025660 2 30-52,119-141
Sequence
Target Sequence 
>C. ELEGANS:179633_AT
taagtgcgattttacattttttccaaattctgcaaaatttagtatatatcgttttgattg
ctctcataccaaatgtggtatcttccgtgatctttgcggtaaccgagaactacaaccaga
aagtcacaaaaaccattgaaaactttgcaaatcccaataattacaccctggcggctcgat
atcaagccaaggagaatgtcaagtgctttgcgatgatcaaaaaagtcattttcgccggga
ttgggatgattttcatctcctgctcaagtattctactaatttatttcgacgttttcccaa
atcacgtggatttgctcaattttgtgtttgaagcgtccttgaatgtaggcccctcattca
ttggcccgacactgatccattccgtcgatgcttggaggaactatgaactttgtccatttt
ccaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGTGCGATTTTACATTTTTTCCA 625 635 554 Antisense
GGTATCTTCCGTGATCTTTGCGGTA 143 505 630 Antisense
ATCCCAATAATTACACCCTGGCGGC 146 37 704 Antisense
ACCCTGGCGGCTCGATATCAAGCCA 282 87 718 Antisense
AAGTCATTTTCGCCGGGATTGGGAT 295 157 776 Antisense
TTCATCTCCTGCTCAAGTATTCTAC 201 689 805 Antisense
TATTTCGACGTTTTCCCAAATCACG 209 451 835 Antisense
TGAAGCGTCCTTGAATGTAGGCCCC 564 573 882 Antisense
AATGTAGGCCCCTCATTCATTGGCC 429 163 895 Antisense
CGACACTGATCCATTCCGTCGATGC 670 251 920 Antisense
TATGAACTTTGTCCATTTTCCAACA 313 657 955 Antisense
Sequence Source Affymetrix Proprietary Database