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[179631_at]

Description F40D4.9 /REP_DB=WormBase Gene ID /WP=CE19843 /TR=Q9XV27 /GB=CAB04367.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 03      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 3.2
(-2.8)
A 		1.3
(-3)
A 		4.2
(-2.6)
A 		49.4
(3)
A 		48
B 4
(1.4)
A 		4.7
(3)
A 		2
(-3)
A 		4
(1.4)
A 		3
C 12.1
(-2.2)
A 		6.2
(-2.7)
A 		2.2
(-3)
A 		75.4
(3)
P 		73
avr 6.4
(-2.5) 		4.1
(-2.8) 		2.8
(-3) 		42.9
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 3.1
(-2.8)
A 		3.7
(-2.6)
A 		19.2
(3)
A 		4.9
(-2.1)
A 		4.7
(-2.2)
A 		2.5
(-3)
A 		17
B 4.5
(-1)
A 		11.3
(3)
A 		1.1
(-3)
A 		5.5
(-0.4)
A 		3.1
(-1.8)
A 		2.4
(-2.2)
A 		10
C 3
(-2.8)
A 		12.2
(-0.7)
A 		2.3
(-3)
A 		4.4
(-2.5)
A 		28.5
(3)
A 		3.7
(-2.7)
A 		26
avr 3.5
(-2.6) 		9.1
(1) 		7.5
(0) 		4.9
(-1.7) 		12.1
(3) 		2.9
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.1
(-2.3)
A 		0.3
(-3)
A 		1.1
(-2.3)
A 		7.2
(3)
A 		7
B 1.3
(3)
A 		1.2
(2.3)
A 		0.5
(-3)
A 		0.8
(-0.8)
A 		1
C 4
(-1.4)
A 		1.8
(-2.5)
A 		0.8
(-3)
A 		12.7
(3)
P 		12
avr 2.1
(-1.7) 		1.1
(-2.7) 		0.8
(-3) 		6.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.3
(-1.8)
A 		4.2
(3)
A 		1.2
(-2)
A 		1.4
(-1.7)
A 		0.6
(-3)
A 		4
B 1.6
(-0.8)
A 		3.8
(3)
A 		0.3
(-3)
A 		1.5
(-0.9)
A 		1.3
(-1.3)
A 		0.9
(-2)
A 		4
C 1.1
(-2.7)
A 		3.7
(-0.8)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		9.2
(3)
A 		1.2
(-2.6)
A 		9
avr 1.1
(-2.6) 		2.9
(0.9) 		1.7
(-1.5) 		1.2
(-2.4) 		4
(3) 		0.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179631_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12624
Sequence Type Exemplar sequence
Representative Public ID F40D4.9 NCBI
Target Description F40D4.9 /REP_DB=WormBase Gene ID /WP=CE19843 /TR=Q9XV27 /GB=CAB04367.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028734(11), NR_002399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028734 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-66) (srz-66) mRNA, complete cds. 11/11 None
NR_002399 NCBI Caenorhabditis elegans srz-66, miscRNA. 11/11 None
SNAP00000026446 ENSEMBL cdna:SNAP chromosome:CEL140:V:17168268:17169641:-1 11/11 None
GENEFINDER00000026457 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17167247:17173299:-1 11/11 None
F40D4.9a ENSEMBL cdna:known chromosome:CEL140:V:17168606:17170135:-1 gene:F40D4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17168605-17170135(-) 100.0 100.0
Public Domain and Genome References
Ensembl F40D4.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04367 Hypothetical protein F40D4.9a [Caenorhabditis elegans] ref|NP_001023905.1| Serpentine Receptor, class Z family member (srz-66) [Caenorhabditis elegans] 1.0E-177
blast CAB04367 Hypothetical protein F40D4.9a [Caenorhabditis elegans] ref|NP_001023905.1| Serpentine Receptor, class Z family member (srz-66) [Caenorhabditis elegans] 1.0E-127
blast CAB04370 Hypothetical protein F40D4.8 [Caenorhabditis elegans] ref|NP_507344.1| Serpentine Receptor, class W family member (srw-51) [Caenorhabditis elegans] 1.0E-101
blast CAB04367 Hypothetical protein F40D4.9a [Caenorhabditis elegans] ref|NP_001023905.1| Serpentine Receptor, class Z family member (srz-66) [Caenorhabditis elegans] 6.0E-94
blast T22017 hypothetical protein F40D4.10 - Caenorhabditis elegans 2.0E-93
blast T22017 hypothetical protein F40D4.10 - Caenorhabditis elegans 3.0E-64
blast AAU05587 Serpentine receptor, class z protein 67 [Caenorhabditis elegans] ref|NP_001021965.1| Serpentine Receptor, class Z family member (srz-67) [Caenorhabditis elegans] 8.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 6.6E-55
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.5E-34
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 6.4E-25
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 6.4E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023905.1 7 48-67,86-108,118-140,178-195,205-227,240-262,277-294
F40D4.9a 7 48-67,86-108,118-140,178-195,205-227,240-262,277-294
SNAP00000026446 5 5-22,43-60,70-92,112-134,149-166
GENEFINDER00000026457 9 39-61,82-104,146-168,203-225,235-257,294-311,321-343,363-385,400-417
Sequence
Target Sequence 
>C. ELEGANS:179631_AT
aattatttatagttgctcttgccattgaacgatttctcctttacttctgtccatccaccg
aaaaactgatcacattagtacaaaactatgttcatcaacgaatcaaatgtatttatattt
cctgtgcaatcaaggatttggtcatatttattctgccctattcttctgatccagaagcta
tgcattattccatggaaattcttattatactgtcttcattgctttatcttccgataatga
taagtgttcgaaagctgtctcatttagcatcggcagaacaaaatcatcctcaaagataca
tcttttggcagacaatggtagtgttgattttcaaatcgttaactctcccagcatcagcta
ttgcactgacaaatgacggaactttgacagaaactcaaaatgcgcaaatgaacattgaga
ttttcacgattccattgataattatgttgtcctatttggggtgtaacaaacggaacttaa
cagttacatttacatcatttaacttgaaatactttttgagaaccatttttagttttgacg
atgcagttgttcaacctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTATTTATAGTTGCTCTTGCCAT 461 175 434 Antisense
TTCTGTCCATCCACCGAAAAACTGA 205 695 478 Antisense
GTATTTATATTTCCTGTGCAATCAA 372 453 542 Antisense
TGGTCATATTTATTCTGCCCTATTC 29 553 572 Antisense
CTGCCCTATTCTTCTGATCCAGAAG 269 237 586 Antisense
GAAAGCTGTCTCATTTAGCATCGGC 458 359 683 Antisense
GATACATCTTTTGGCAGACAATGGT 334 421 728 Antisense
TTTTCAAATCGTTAACTCTCCCAGC 502 675 761 Antisense
TCTCCCAGCATCAGCTATTGCACTG 659 609 777 Antisense
GAGATTTTCACGATTCCATTGATAA 507 397 850 Antisense
GACGATGCAGTTGTTCAACCTCAAA 514 373 970 Antisense
Sequence Source Affymetrix Proprietary Database