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[179629_at]

Description B0284.2 /REP_DB=WormBase Gene ID /WP=CE00651 /TR=Q17469 /GB=CAA83223.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 82      6grp_total > 80      4grp_total > 03      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 34.7
(-0.8)
A 		16.6
(-2.3)
A 		8.9
(-3)
A 		78.4
(3)
P 		70
B 5.9
(-2.7)
A 		2.8
(-3)
A 		2.9
(-3)
A 		61.4
(3)
A 		59
C 8.4
(-2.7)
A 		9.4
(-2.7)
A 		1.6
(-3)
A 		150.1
(3)
P 		149
avr 16.3
(-2.2) 		9.6
(-2.7) 		4.5
(-3) 		96.6
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 13.9
(-3)
A 		87.8
(-0.9)
P 		104.7
(-0.4)
P 		224.7
(3)
P 		112
(-0.2)
P 		48
(-2)
P 		211
B 82.2
(-0.3)
P 		40
(-3)
A 		85.6
(-0.1)
P 		121.7
(2.2)
P 		133.6
(3)
P 		90.9
(0.3)
P 		94
C 59.2
(-2.9)
P 		94.4
(-1.3)
P 		81.4
(-1.9)
P 		187.3
(3)
P 		56.6
(-3)
P 		132.7
(0.5)
P 		131
avr 51.8
(-3) 		74.1
(-1.9) 		90.6
(-1.2) 		177.9
(3) 		100.7
(-0.7) 		90.5
(-1.2) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 12.6
(3)
A 		3.6
(-2.2)
A 		2.3
(-3)
A 		11.5
(2.4)
P 		10
B 1.9
(-2.4)
A 		0.7
(-3)
A 		0.7
(-3)
A 		13.1
(3)
A 		12
C 2.8
(-2.5)
A 		2.7
(-2.5)
A 		0.6
(-3)
A 		25.3
(3)
P 		25
avr 5.8
(-1.2) 		2.3
(-2.6) 		1.2
(-3) 		16.6
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 2.6
(-3)
A 		31.2
(0.2)
P 		22.8
(-0.8)
P 		57
(3)
P 		33.8
(0.4)
P 		11.7
(-2)
P 		54
B 28.6
(-0.8)
P 		13.3
(-3)
A 		20.8
(-1.9)
P 		32.2
(-0.2)
P 		54.3
(3)
P 		33.9
(0)
P 		41
C 21.9
(-2.2)
P 		28.8
(-0.6)
P 		20.7
(-2.4)
P 		37.7
(1.5)
P 		18.3
(-3)
P 		44.4
(3)
P 		26
avr 17.7
(-3) 		24.4
(-1.4) 		21.4
(-2.1) 		42.3
(3) 		35.5
(1.3) 		30
(0) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6164
Sequence Type Exemplar sequence
Representative Public ID B0284.2 NCBI
Target Description B0284.2 /REP_DB=WormBase Gene ID /WP=CE00651 /TR=Q17469 /GB=CAA83223.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065483 NCBI Caenorhabditis elegans B0284.2 (B0284.2) mRNA, complete cds. 11/11 None
GENEFINDER00000025284 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4380829:4383986:1 11/11 None
SNAP00000025282 ENSEMBL cdna:SNAP chromosome:CEL140:III:4382594:4383986:1 11/11 None
B0284.2 ENSEMBL cdna:known chromosome:CEL140:III:4381708:4384115:1 gene:B0284.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4381707-4383986(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0284.2
Entrez Gene 175567 Entrez gene
SwissProt Q17469 EMBL-EBI
WormBase CE00651 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83223 Hypothetical protein B0284.2 [Caenorhabditis elegans] ref|NP_497884.1| B0284.2 [Caenorhabditis elegans] 0.0
blast CAA83223 Hypothetical protein B0284.2 [Caenorhabditis elegans] ref|NP_497884.1| B0284.2 [Caenorhabditis elegans] 1.0E-167
blast CAA83222 Hypothetical protein B0284.4 [Caenorhabditis elegans] ref|NP_497885.1| B0284.4 [Caenorhabditis elegans] 1.0E-72
blast CAA83222 Hypothetical protein B0284.4 [Caenorhabditis elegans] ref|NP_497885.1| B0284.4 [Caenorhabditis elegans] 2.0E-72
blast CAA83220 Hypothetical protein B0284.1 [Caenorhabditis elegans] ref|NP_497882.1| B0284.1 [Caenorhabditis elegans] 8.0E-70
blast CAA83220 Hypothetical protein B0284.1 [Caenorhabditis elegans] ref|NP_497882.1| B0284.1 [Caenorhabditis elegans] 9.0E-70
Sequence
Target Sequence 
>C. ELEGANS:179629_AT
ggaaaagttctcattgctcgtggtgatgatgacaatgaacaaaatttcattgatgcagtg
aattcaataagacaaaaaggatatgctgtttctgatattatttctcgtttgggagaacat
gcttattgtcttcataaaggacattcggttcattcggtgaagaatgatgttttcaagtgt
agtaaagcgttgggccaagcaaagttgaagcttggccaattgagggacgatgtcaatcac
ttattgggtcaccaggaatctcgaaactcaggagttcctgtttgtcatgacgcagcgcgg
caaattgaagaagctataaaagaactggaaacttctttgaacaagttcaaagggtcttta
aacggaaaaaattctattgagctgtacgagaatgttctggagaaaaataagaatctcact
ggcaaaatacacggtcttccatcacttgtgaagagcaattacacattgaatgccattcaa
aacggttttcaaagtatttgtgctgttaatggtaatcacgttgccagtcttgagcagaca
acgactctggctcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAAGTTCTCATTGCTCGTGGTG 657 527 670 Antisense
GCTGTTTCTGATATTATTTCTCGTT 463 295 754 Antisense
GGGAGAACATGCTTATTGTCTTCAT 574 495 780 Antisense
AAAGGACATTCGGTTCATTCGGTGA 406 121 805 Antisense
GCTTGGCCAATTGAGGGACGATGTC 250 303 879 Antisense
GATGTCAATCACTTATTGGGTCACC 281 409 898 Antisense
GGGTCACCAGGAATCTCGAAACTCA 459 497 915 Antisense
GTTCCTGTTTGTCATGACGCAGCGC 540 441 943 Antisense
AAAATACACGGTCTTCCATCACTTG 645 127 1093 Antisense
GGTAATCACGTTGCCAGTCTTGAGC 59 503 1180 Antisense
GAGCAGACAACGACTCTGGCTCTTC 555 389 1201 Antisense
Sequence Source Affymetrix Proprietary Database