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[179628_at]

Description R10E4.1 /REP_DB=WormBase Gene ID /WP=CE03555 /TR=Q21899 /GB=CAA90763.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 06      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 41      6grp_total > 14      4grp_total > 39      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 767.4
(3)
P 		488.6
(-2.6)
P 		466.6
(-3)
P 		518.5
(-2)
P 		301
B 714.9
(3)
P 		479.3
(-1.2)
P 		380.4
(-3)
P 		571.4
(0.4)
P 		335
C 716.4
(3)
P 		478.3
(-3)
P 		537.5
(-1.5)
P 		552.4
(-1.1)
P 		238
avr 732.9
(3) 		482.1
(-2.5) 		461.5
(-3) 		547.4
(-1.1) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 1004.7
(3)
P 		823.8
(0.3)
P 		691.7
(-1.7)
P 		742.3
(-0.9)
P 		708.6
(-1.4)
P 		602
(-3)
P 		403
B 1022.3
(3)
P 		834.3
(0.8)
P 		683.9
(-1)
P 		728
(-0.5)
P 		560.2
(-2.5)
P 		515.3
(-3)
P 		507
C 936.4
(3)
P 		854.2
(1.7)
P 		825.3
(1.3)
P 		807.5
(1)
P 		548.5
(-3)
P 		573.2
(-2.6)
P 		388
avr 987.8
(3) 		837.4
(0.9) 		733.6
(-0.6) 		759.3
(-0.2) 		605.8
(-2.4) 		563.5
(-3) 		424
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 279.4
(3)
P 		106.1
(-2.1)
P 		122
(-1.6)
P 		75.9
(-3)
P 		204
B 228
(3)
P 		118.4
(-1.7)
P 		88.2
(-3)
P 		121.8
(-1.6)
P 		140
C 237.1
(3)
P 		137.5
(-1.2)
P 		187.3
(0.9)
P 		93.1
(-3)
P 		144
avr 248.2
(3) 		120.7
(-2.1) 		132.5
(-1.6) 		96.9
(-3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 185.2
(-1.4)
P 		293
(3)
P 		150.6
(-2.8)
P 		188.3
(-1.3)
P 		213.8
(-0.2)
P 		146.6
(-3)
P 		146
B 355.7
(3)
P 		277.7
(0.5)
P 		166.1
(-3)
P 		192.8
(-2.2)
P 		227.6
(-1.1)
P 		192.2
(-2.2)
P 		190
C 347.1
(3)
P 		260.7
(0.2)
P 		210.1
(-1.5)
P 		162.4
(-3)
P 		177.5
(-2.5)
P 		191.9
(-2)
P 		185
avr 296
(3) 		277.1
(2.1) 		175.6
(-3) 		181.2
(-2.7) 		206.3
(-1.5) 		176.9
(-2.9) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179628_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6652
Sequence Type Exemplar sequence
Representative Public ID R10E4.1 NCBI
Target Description R10E4.1 /REP_DB=WormBase Gene ID /WP=CE03555 /TR=Q21899 /GB=CAA90763.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065453(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065453 NCBI Caenorhabditis elegans R10E4.1 (R10E4.1) mRNA, complete cds. 11/11 None
SNAP00000016393 ENSEMBL cdna:SNAP chromosome:CEL140:III:4270241:4272223:1 11/11 None
GENEFINDER00000016405 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4270241:4272223:1 11/11 None
R10E4.1 ENSEMBL cdna:known chromosome:CEL140:III:4270227:4272415:1 gene:R10E4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4270240-4272223(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E4.1
Entrez Gene 175550 Entrez gene
SwissProt Q21899 EMBL-EBI
WormBase CE03555 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90763 Hypothetical protein R10E4.1 [Caenorhabditis elegans] ref|NP_497854.1| R10E4.1 [Caenorhabditis elegans] 0.0
blast CAE66913 Hypothetical protein CBG12300 [Caenorhabditis briggsae] 1.0E-165
blast CAE66913 Hypothetical protein CBG12300 [Caenorhabditis briggsae] 1.0E-161
blast CAA91323 Hypothetical protein F52H3.3 [Caenorhabditis elegans] ref|NP_496172.1| F52H3.3 [Caenorhabditis elegans] 6.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.5E-24
Sequence
Target Sequence 
>C. ELEGANS:179628_AT
atgatgtctccattctttaaagcattattctatggagaattgggtgaagataaagaaatc
tatgagatgaaagagaagttccgtgagattataactttcctcagatgtatttatccacac
agacaacctgttacaaagaaaagcctcgactatcttctccaactcgcagatcgttatcaa
tgtcaaccaattgtggatgcgtgtgagatgttcatgtgtgcacattatcatgaatatcag
aagaagacggagaaatgtttctcttacgtggaaaagtataagatgcaaagagttttgcga
attattgtcgaatacgtggcagtaacccaatcaccagctcaattccgtcttcaatcatac
tatcgagatctttctgagaagacacaacttgctgttttggattacatggcaaagaatcaa
agtcgacgtggaaaagagttggaacgtcgtcgtggagtaaattctcatcgagcaaacatc
gatccaatcgacgatcaggatccaccaaatggacgtcttcttggaattgctgatccattg
agaaatgcggatccacgtccaccacagcctggctacaatgttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATGTCTCCATTCTTTAAAGCAT 372 45 520 Antisense
GTATTTATCCACACAGACAACCTGT 674 451 626 Antisense
AAGAAAAGCCTCGACTATCTTCTCC 74 153 655 Antisense
TTCTCCAACTCGCAGATCGTTATCA 390 683 674 Antisense
TACGTGGCAGTAACCCAATCACCAG 320 647 832 Antisense
AATTCCGTCTTCAATCATACTATCG 450 177 860 Antisense
GAAGACACAACTTGCTGTTTTGGAT 56 339 897 Antisense
GGATCCACCAAATGGACGTCTTCTT 371 503 1017 Antisense
GGACGTCTTCTTGGAATTGCTGATC 240 525 1030 Antisense
TTGAGAAATGCGGATCCACGTCCAC 149 707 1057 Antisense
CCACAGCCTGGCTACAATGTTCCAA 297 275 1081 Antisense
Sequence Source Affymetrix Proprietary Database