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[179627_at]

Description C33D9.6 /REP_DB=WormBase Gene ID /WP=CE03047 /TR=Q18377 /GB=CAA92287.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 23      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 159.4
(3)
A 		43.2
(-1.6)
A 		9.4
(-3)
A 		98.5
(0.6)
A 		150
B 135.9
(3)
P 		66.5
(-0.8)
A 		25.8
(-3)
A 		113.7
(1.8)
M 		110
C 180.1
(3)
P 		32.9
(-3)
A 		34.6
(-2.9)
A 		172.2
(2.7)
P 		147
avr 158.5
(3) 		47.5
(-1.9) 		23.3
(-3) 		128.1
(1.7) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 157.3
(2.8)
P 		161.3
(3)
P 		100.5
(-0.6)
A 		102.7
(-0.5)
P 		112.7
(0.1)
P 		59.7
(-3)
A 		102
B 154.2
(2)
P 		170.2
(3)
P 		116.4
(-0.5)
A 		117.7
(-0.4)
A 		95
(-1.8)
P 		76.7
(-3)
P 		94
C 123.8
(1.8)
P 		143.7
(3)
P 		112.1
(1.1)
A 		111.2
(1)
M 		44.6
(-3)
A 		57.8
(-2.2)
A 		99
avr 145.1
(2.1) 		158.4
(3) 		109.7
(-0.1) 		110.5
(-0.1) 		84.1
(-1.8) 		64.7
(-3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 58
(3)
A 		9.4
(-2.3)
A 		2.5
(-3)
A 		14.4
(-1.7)
A 		56
B 43.3
(3)
P 		16.4
(-1.3)
A 		6
(-3)
A 		24.2
(-0.1)
M 		37
C 59.6
(3)
P 		9.4
(-3)
A 		12.1
(-2.7)
A 		29
(-0.7)
P 		50
avr 53.6
(3) 		11.7
(-2.4) 		6.9
(-3) 		22.5
(-1) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 29
(-1)
P 		57.4
(3)
P 		21.9
(-2)
A 		26
(-1.4)
P 		34
(-0.3)
P 		14.5
(-3)
A 		43
B 53.7
(2.4)
P 		56.7
(3)
P 		28.3
(-3)
A 		31.2
(-2.4)
A 		38.6
(-0.8)
P 		28.6
(-2.9)
P 		28
C 45.9
(3)
P 		43.8
(2.6)
P 		28.5
(-0.3)
A 		22.4
(-1.5)
M 		14.4
(-3)
A 		19.3
(-2.1)
A 		32
avr 42.9
(1.2) 		52.6
(3) 		26.2
(-2) 		26.5
(-1.9) 		29
(-1.5) 		20.8
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10314
Sequence Type Exemplar sequence
Representative Public ID C33D9.6 NCBI
Target Description C33D9.6 /REP_DB=WormBase Gene ID /WP=CE03047 /TR=Q18377 /GB=CAA92287.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069113(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069113 NCBI Caenorhabditis elegans C33D9.9 (C33D9.9) mRNA, complete cds. 11/11 None
C33D9.9 ENSEMBL cdna:known chromosome:CEL140:IV:8773287:8775299:-1 gene:C33D9.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033365 6/11 Cross Hyb Matching Probes None
SNAP00000033366 3/11 Cross Hyb Matching Probes None
GENEFINDER00000033382 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8773939-8778094(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33D9.9
Entrez Gene 177688 Entrez gene
SwissProt Q8WQG2 EMBL-EBI
WormBase CE29589 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD01080 Hypothetical protein C33D9.9 [Caenorhabditis elegans] ref|NP_501514.1| C33D9.9 [Caenorhabditis elegans] 1.0E-156
Sequence
Target Sequence 
>C. ELEGANS:179627_AT
aacttaaggaagcgcatcatctgaagcttactcagcgaatcgaagatctcgagaaaaaat
tggcagaaaaagatgaacggctgaattatctggagcaacttccaaatcaaaatgaactat
gttcaatgcttcagaaagaaattttgaaacttcgttcatcgcctgctagagataaaaaat
cacaaagtttatcatctcaattcatgaaacagagggatcctgacatcgaattaatctacc
actcagaaaatagaggaaaagcgagcagtaaagataatgcaatggaaaccaactcccata
gttctagtggaactaaaaagagaagagttatttcttcagaagagttggaagcttcttcct
cgtatcctatcgcaagcatgaagaattgtctgaaaaatgaagaaattcagaaaatgcaaa
aagctctgaaagagaaagatgagcaaatttcgaaacttaccgagcaacttcaaggacttc
tga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTAAGGAAGCGCATCATCTGAA 193 139 1832 Antisense
ATCATCTGAAGCTTACTCAGCGAAT 97 31 1847 Antisense
TTTTGAAACTTCGTTCATCGCCTGC 125 679 1973 Antisense
TTCGTTCATCGCCTGCTAGAGATAA 340 695 1982 Antisense
CACAAAGTTTATCATCTCAATTCAT 268 195 2012 Antisense
GAAACAGAGGGATCCTGACATCGAA 351 355 2037 Antisense
GACATCGAATTAATCTACCACTCAG 46 371 2053 Antisense
GGAAACCAACTCCCATAGTTCTAGT 35 529 2115 Antisense
GAGTTGGAAGCTTCTTCCTCGTATC 702 395 2173 Antisense
CCTCGTATCCTATCGCAAGCATGAA 643 267 2189 Antisense
ACCGAGCAACTTCAAGGACTTCTGA 41 89 2290 Antisense
Sequence Source Affymetrix Proprietary Database