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[179626_at]

Description F26F2.1 /REP_DB=WormBase Gene ID /WP=CE19813 /TR=Q9N6L0 /GB=CAB82205.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 04      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 29.5
(3)
A 		14.9
(-0.9)
A 		7.1
(-3)
A 		10.1
(-2.2)
A 		22
B 7.2
(-3)
A 		8
(-2.8)
A 		9.1
(-2.6)
A 		33.7
(3)
A 		27
C 13.2
(-2.3)
A 		7.7
(-2.8)
A 		5.8
(-3)
A 		65.7
(3)
A 		60
avr 16.6
(-1.1) 		10.2
(-2.4) 		7.3
(-3) 		36.5
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 10.6
(-3)
A 		44.4
(1)
A 		20.2
(-1.9)
A 		37
(0.1)
A 		61.8
(3)
A 		40
(0.4)
A 		51
B 12.5
(-2.7)
A 		8.3
(-3)
A 		84.3
(3)
A 		48.7
(0.2)
A 		84.7
(3)
A 		48
(0.1)
A 		76
C 20.1
(-3)
A 		31.6
(-1.7)
A 		24.4
(-2.5)
A 		60.2
(1.5)
A 		73
(3)
A 		57.5
(1.2)
A 		53
avr 14.4
(-3) 		28.1
(-1.6) 		43
(-0.1) 		48.6
(0.5) 		73.2
(3) 		48.5
(0.5) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.7
(3)
A 		3.2
(-1.9)
A 		1.9
(-2.7)
A 		1.5
(-3)
A 		9
B 2.3
(-2.7)
A 		2
(-3)
A 		2.1
(-2.9)
A 		7.2
(3)
A 		5
C 4.4
(-1.4)
A 		2.2
(-2.9)
A 		2
(-3)
A 		11.1
(3)
A 		9
avr 5.8
(2) 		2.5
(-2.3) 		2
(-3) 		6.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 2
(-3)
A 		15.8
(2)
A 		4.4
(-2.1)
A 		9.4
(-0.3)
A 		18.7
(3)
A 		9.7
(-0.2)
A 		17
B 4.4
(-2.7)
A 		2.8
(-3)
A 		20.5
(0.4)
A 		12.9
(-1.1)
A 		34.4
(3)
A 		17.9
(-0.1)
A 		32
C 7.5
(-2.6)
A 		9.6
(-1.8)
A 		6.2
(-3)
A 		12.1
(-1)
A 		23.6
(3)
A 		19.2
(1.5)
A 		17
avr 4.6
(-3) 		9.4
(-1.6) 		10.4
(-1.3) 		11.5
(-1) 		25.6
(3) 		15.6
(0.1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179626_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12718
Sequence Type Exemplar sequence
Representative Public ID F26F2.1 NCBI
Target Description F26F2.1 /REP_DB=WormBase Gene ID /WP=CE19813 /TR=Q9N6L0 /GB=CAB82205.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075565 NCBI Caenorhabditis elegans F26F2.1 (F26F2.1) mRNA, complete cds. 11/11 None
F26F2.1 ENSEMBL cdna:known chromosome:CEL140:V:20557097:20558508:-1 gene:F26F2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015787 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015806 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20557096-20558508(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F2.1
Entrez Gene 184982 Entrez gene
SwissProt Q9N6L0 EMBL-EBI
WormBase CE19813 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB82205 Hypothetical protein F26F2.1 [Caenorhabditis elegans] emb|CAB82214.1| Hypothetical protein F26F2.1 [Caenorhabditis elegans] ref|NP_507966.1| F26F2.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179626_AT
gagccgagaggtcacggatttcacgaaaatgatcgaacaagccttgagccgaattacaaa
aatgtctccatgaatcccagaggggtgtttgatcaaggagtgcaacggtatgcagagaat
cgagaagattggtcggatgatcagcagaggatgtacatggaaccaggtcagagacaccgc
gaagatcaccaaacgagagttggcaatagaggaaatgggccatatcgcggaaattctcac
aatacttcaagggctgatgaacttcatcttcagcgccgtcaaaccaacaatagccagatt
cataatcagcaatttgatgatcatttcgtcgacaatagaaaaactcattcctacaatgga
ccagaagataaagaccctaatcacttacgattgtcgttggaacaacaggaaatcagaaat
atagacggatttaatcaaatgaaaagaatgatggaaaacaatcgaatgatattagaggct
gatcatgccaaaagagacgcaaaatcaatagcgaaggaagagaaaatcaagaaacaccat
acatccatgagcacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCGAGAGGTCACGGATTTCACG 689 385 352 Antisense
GAACAAGCCTTGAGCCGAATTACAA 360 353 386 Antisense
ATGTCTCCATGAATCCCAGAGGGGT 253 47 413 Antisense
TGGAACCAGGTCAGAGACACCGCGA 204 547 509 Antisense
GACACCGCGAAGATCACCAAACGAG 543 365 524 Antisense
TGGGCCATATCGCGGAAATTCTCAC 587 553 567 Antisense
CTGATGAACTTCATCTTCAGCGCCG 429 239 605 Antisense
TCAGCGCCGTCAAACCAACAATAGC 167 625 621 Antisense
AAACTCATTCCTACAATGGACCAGA 650 127 692 Antisense
GACCCTAATCACTTACGATTGTCGT 684 379 724 Antisense
AACACCATACATCCATGAGCACGAC 51 137 884 Antisense
Sequence Source Affymetrix Proprietary Database