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[179625_at]

Description T14G8.4 /REP_DB=WormBase Gene ID /WP=CE03660 /TR=Q22514 /GB=CAA91808.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 33      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 40.2
(-3)
A 		79.9
(2.3)
A 		66
(0.5)
P 		84.8
(3)
P 		45
B 41.3
(-3)
A 		61.6
(3)
A 		51.2
(-0.1)
A 		43.4
(-2.4)
A 		20
C 48.3
(-2.5)
A 		46.6
(-3)
A 		68.5
(3)
P 		49.9
(-2.1)
A 		22
avr 43.3
(-3) 		62.7
(3) 		61.9
(2.8) 		59.4
(2) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 134.9
(3)
A 		61.1
(-1.2)
P 		29.5
(-3)
P 		29.9
(-3)
A 		45.1
(-2.1)
A 		47.4
(-2)
A 		105
B 61.5
(0.6)
P 		65.4
(1)
P 		45.9
(-1)
P 		85.9
(3)
A 		25.7
(-3)
P 		28.9
(-2.7)
P 		60
C 63.3
(2.3)
P 		67.7
(3)
P 		61.5
(2.1)
P 		27.5
(-3)
A 		34.5
(-2)
A 		36.6
(-1.6)
A 		40
avr 86.6
(3) 		64.7
(0.4) 		45.6
(-1.8) 		47.8
(-1.5) 		35.1
(-3) 		37.6
(-2.7) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.6
(-0.4)
A 		17.4
(3)
A 		17.3
(2.9)
P 		12.4
(-3)
P 		5
B 13.2
(1)
A 		15.2
(3)
A 		11.9
(-0.3)
A 		9.2
(-3)
A 		6
C 16
(-0.1)
A 		13.4
(-1.1)
A 		23.9
(3)
P 		8.4
(-3)
A 		16
avr 14.6
(0.6) 		15.3
(1.1) 		17.7
(3) 		10
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 24.9
(3)
A 		21.7
(2)
P 		6.4
(-3)
P 		7.6
(-2.6)
A 		13.6
(-0.7)
A 		11.6
(-1.3)
A 		19
B 21.4
(2.3)
P 		21.8
(2.5)
P 		11.1
(-2.7)
P 		22.8
(3)
A 		10.4
(-3)
P 		10.8
(-2.8)
P 		12
C 23.5
(3)
P 		20.7
(2.1)
P 		15.6
(0.4)
P 		5.5
(-3)
A 		11.2
(-1.1)
A 		12.3
(-0.7)
A 		18
avr 23.3
(3) 		21.4
(2.1) 		11
(-3) 		12
(-2.5) 		11.7
(-2.7) 		11.6
(-2.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179625_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17963
Sequence Type Exemplar sequence
Representative Public ID T14G8.4 NCBI
Target Description T14G8.4 /REP_DB=WormBase Gene ID /WP=CE03660 /TR=Q22514 /GB=CAA91808.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077742 NCBI Caenorhabditis elegans T14G8.4 (T14G8.4) mRNA, complete cds. 11/11 None
SNAP00000007535 ENSEMBL cdna:SNAP chromosome:CEL140:X:12862073:12862762:-1 9/11 None
GENEFINDER00000007540 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12862073:12863810:-1 9/11 None
T14G8.4 ENSEMBL cdna:known chromosome:CEL140:X:12862073:12863810:-1 gene:T14G8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12862072-12863810(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14G8.4
Entrez Gene 188503 Entrez gene
SwissProt Q22514 EMBL-EBI
WormBase CE03660 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91808 Hypothetical protein T14G8.4 [Caenorhabditis elegans] ref|NP_510143.1| T14G8.4 [Caenorhabditis elegans] 0.0
blast CAA91808 Hypothetical protein T14G8.4 [Caenorhabditis elegans] ref|NP_510143.1| T14G8.4 [Caenorhabditis elegans] 7.0E-93
blast CAA91808 Hypothetical protein T14G8.4 [Caenorhabditis elegans] ref|NP_510143.1| T14G8.4 [Caenorhabditis elegans] 8.0E-93
blast CAE57202 Hypothetical protein CBG00052 [Caenorhabditis briggsae] 2.0E-24
blast CAE57202 Hypothetical protein CBG00052 [Caenorhabditis briggsae] 2.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510143.1 1 218-240
T14G8.4 1 218-240
Sequence
Target Sequence 
>C. ELEGANS:179625_AT
tgttttgctgtgttgctttttccaactaaatatcgtaatgtggtgtcctttcattgtggg
tactgtggtaaatttgaatgcagcgcttcgacagtctctatacactgttttcgtcgagaa
ttacttggattatgaagaagatcaaaccgctcacaatcttaacgtggcctcgactgcttt
gcacgatcactaccagtttcttattcaagagggccacctggcaatcgatgaccaaaatgt
cccgactctccaaacgataatgggtcagatccgaacatgcgctctcactgaaaatgacac
cgacatcctggacacagccctggctgctcacgacttagccgacttggtttcagatggtga
aactgaagattaccgcgaggaaatcattcgcgagcttcattcggagatgaatggtctcct
gtgctgcagagatcacttgctctcaatgttcacttacctcaaagtgtttcattgcttgtt
ggataaccaagacaactgggatgacgagcttgtcgactacgcatacgaatacgtttacgt
caatctgtgctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTGCTGTGTTGCTTTTTCCAA 544 561 699 Antisense
GTGGTGTCCTTTCATTGTGGGTACT 140 489 738 Antisense
ACCGCTCACAATCTTAACGTGGCCT 656 89 844 Antisense
TTGCACGATCACTACCAGTTTCTTA 667 701 877 Antisense
CGATGACCAAAATGTCCCGACTCTC 344 247 924 Antisense
CTCACGACTTAGCCGACTTGGTTTC 646 223 1025 Antisense
ATCATTCGCGAGCTTCATTCGGAGA 251 31 1081 Antisense
GGTCTCCTGTGCTGCAGAGATCACT 324 501 1111 Antisense
CTCTCAATGTTCACTTACCTCAAAG 165 231 1138 Antisense
GATGACGAGCTTGTCGACTACGCAT 615 411 1198 Antisense
ATACGTTTACGTCAATCTGTGCTAC 299 5 1227 Antisense
Sequence Source Affymetrix Proprietary Database