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[179624_at]

Description F09C3.3 /REP_DB=WormBase Gene ID /WP=CE24885 /TR=O17774 /GB=CAB07181.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 11.1
(-2.5)
A 		41.6
(-0.3)
A 		4.9
(-3)
A 		87
(3)
A 		82
B 43.7
(3)
A 		3.4
(-3)
A 		32.5
(1.3)
A 		26.8
(0.5)
A 		40
C 23.3
(-2.5)
A 		34.3
(-0.9)
A 		20.1
(-3)
A 		60.7
(3)
P 		41
avr 26
(-2) 		26.4
(-1.9) 		19.2
(-3) 		58.2
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 46.6
(2.2)
A 		15
(-1.9)
A 		52.6
(3)
A 		6.4
(-3)
A 		6.8
(-2.9)
A 		34.9
(0.7)
A 		46
B 27.6
(1.7)
A 		11.2
(-1.3)
A 		35
(3)
A 		4
(-2.7)
A 		2.1
(-3)
A 		9.6
(-1.6)
A 		33
C 7
(-2.8)
A 		6
(-3)
A 		36.4
(1.8)
A 		17.6
(-1.2)
A 		8.5
(-2.6)
A 		44.1
(3)
A 		38
avr 27.1
(0.6) 		10.7
(-2.2) 		41.3
(3) 		9.3
(-2.4) 		5.8
(-3) 		29.5
(1) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4
(-1.6)
A 		9
(1.1)
A 		1.3
(-3)
A 		12.7
(3)
A 		11
B 13.9
(3)
A 		0.8
(-3)
A 		7.5
(0.1)
A 		5.7
(-0.8)
A 		13
C 7.7
(-1.7)
A 		9.9
(2.4)
A 		7
(-3)
A 		10.2
(3)
P 		3
avr 8.5
(1.6) 		6.6
(-1.1) 		5.3
(-3) 		9.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.6
(1.2)
A 		5.3
(-0.8)
A 		11.5
(3)
A 		1.6
(-3)
A 		2
(-2.8)
A 		8.5
(1.2)
A 		10
B 9.6
(3)
A 		3.7
(-1.1)
A 		8.5
(2.2)
A 		1
(-2.9)
A 		0.9
(-3)
A 		3.6
(-1.1)
A 		9
C 2.6
(-2.6)
A 		1.8
(-3)
A 		9.3
(0.5)
A 		3.5
(-2.2)
A 		2.7
(-2.6)
A 		14.8
(3)
A 		13
avr 6.9
(0.8) 		3.6
(-1.7) 		9.8
(3) 		2
(-2.9) 		1.9
(-3) 		9
(2.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179624_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1850
Sequence Type Exemplar sequence
Representative Public ID F09C3.3 NCBI
Target Description F09C3.3 /REP_DB=WormBase Gene ID /WP=CE24885 /TR=O17774 /GB=CAB07181.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061094 NCBI Caenorhabditis elegans F09C3.3 (F09C3.3) mRNA, complete cds. 11/11 None
F09C3.3 ENSEMBL cdna:known chromosome:CEL140:I:14293824:14295195:-1 gene:F09C3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039672 6/11 Cross Hyb Matching Probes None
SNAP00000039657 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14293754-14295126(-) 91.29 100.0
Public Domain and Genome References
Gene Title
Ensembl F09C3.3
Entrez Gene 184227 Entrez gene
SwissProt O17774 EMBL-EBI
WormBase CE24885 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07181 Hypothetical protein F09C3.3 [Caenorhabditis elegans] ref|NP_493495.1| F09C3.3 [Caenorhabditis elegans] 0.0
blast CAB82208 Hypothetical protein F09C3.5 [Caenorhabditis elegans] ref|NP_493494.1| F09C3.5 [Caenorhabditis elegans] 1.0E-81
blast CAB04424 Hypothetical protein F49B2.2 [Caenorhabditis elegans] ref|NP_493498.1| F49B2.2 [Caenorhabditis elegans] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.3E-5
Sequence
Target Sequence 
>C. ELEGANS:179624_AT
gacaacacggaacggttttctatcgaatacagtgaaagatttatcagcagacatgagata
cacgatttattagccagagatctccatcgtatagtatttctcgattggagaccttatttg
ctacaggcaataaactcgaattgtgagcgtatagtgctcgagtgttatgttgaaagccaa
ttattgaataaatttttgaaacactggatgcgagggtcgaaccccaggatgaaatatctt
caggctaaagttgatattaagaatcaaaaatacaaatcacaaatactagaaggaattgag
acattaccccttaagaacagaacatccattgaaagtttcgacggaaagaaagccaggatt
aatttgatgaacgacggattgtttctgataaagcttgaaacagacttgaacatcaacgat
cggaagaatcagaatcagtctggagcagggctgagcggctggctgattttgtcggctgtc
ggcgccggccgacagccgctcagccctggtctggagatcccacgggaacatttcgtttta
tatttttctgcagcggcagcacgtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAACACGGAACGGTTTTCTATCG 356 365 592 Antisense
GATTTATTAGCCAGAGATCTCCATC 263 429 655 Antisense
GATCTCCATCGTATAGTATTTCTCG 326 419 670 Antisense
CGATTGGAGACCTTATTTGCTACAG 119 249 693 Antisense
CACTGGATGCGAGGGTCGAACCCCA 115 197 793 Antisense
GGAATTGAGACATTACCCCTTAAGA 463 533 883 Antisense
TCAGTCTGGAGCAGGGCTGAGCGGC 548 623 1026 Antisense
GCTGAGCGGCTGGCTGATTTTGTCG 111 297 1041 Antisense
GGCTGTCGGCGCCGGCCGACAGCCG 242 541 1065 Antisense
TGGTCTGGAGATCCCACGGGAACAT 552 543 1098 Antisense
TTTTTCTGCAGCGGCAGCACGTGCT 136 673 1134 Antisense
Sequence Source Affymetrix Proprietary Database