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[179623_s_at]

Description B0035.6 /REP_DB=WormBase Gene ID /WP=CE20443 /TR=Q17436 /GB=CAA97420.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 23      6grp_total > 87      4grp_total > 0      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 170.6
(-1.6)
P 		149
(-3)
P 		209.5
(1.1)
A 		238.5
(3)
P 		90
B 135.4
(-3)
P 		154.8
(-1.2)
P 		198.6
(3)
P 		173.9
(0.7)
P 		63
C 182.8
(-0.6)
P 		157
(-3)
A 		185.8
(-0.4)
P 		222.5
(3)
P 		66
avr 162.9
(-2) 		153.6
(-3) 		198
(1.6) 		211.6
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 752
1 2 3 4 5 6 range
A 156.7
(-3)
A 		176.2
(-2.8)
P 		166.3
(-2.9)
P 		283.8
(-1.9)
P 		457.7
(-0.4)
P 		862.4
(3)
P 		706
B 133.5
(-3)
A 		170.7
(-2.6)
P 		188.9
(-2.3)
P 		223.3
(-1.9)
P 		418.4
(0.4)
P 		633.5
(3)
P 		500
C 110.4
(-3)
P 		154.9
(-2.5)
A 		197.5
(-2.1)
P 		250.4
(-1.6)
P 		457.3
(0.6)
P 		692.8
(3)
P 		582
avr 133.5
(-3) 		167.3
(-2.7) 		184.2
(-2.5) 		252.5
(-1.8) 		444.5
(0.1) 		729.6
(3) 		596
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 62.1
(3)
P 		32.4
(-3)
P 		54.8
(1.5)
A 		34.9
(-2.5)
P 		30
B 43.2
(1.1)
P 		38.2
(-2.3)
P 		46
(3)
P 		37.1
(-3)
P 		9
C 60.5
(2.1)
P 		45.1
(-1.3)
A 		64.8
(3)
P 		37.5
(-3)
P 		27
avr 55.3
(3) 		38.6
(-2.3) 		55.2
(3) 		36.5
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 28.9
(-3)
A 		62.7
(-1.9)
P 		36.2
(-2.8)
P 		72
(-1.6)
P 		138.1
(0.6)
P 		210
(3)
P 		181
B 46.4
(-3)
A 		56.8
(-2.7)
P 		45.9
(-3)
P 		59.2
(-2.6)
P 		170
(0.9)
P 		236.2
(3)
P 		190
C 40.9
(-3)
P 		47.3
(-2.8)
A 		50.3
(-2.7)
P 		50.4
(-2.7)
P 		148
(0.4)
P 		231.9
(3)
P 		191
avr 38.7
(-3) 		55.6
(-2.5) 		44.1
(-2.8) 		60.5
(-2.3) 		152
(0.6) 		226
(3) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179623_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9798
Sequence Type Exemplar sequence
Representative Public ID B0035.6 NCBI
Target Description B0035.6 /REP_DB=WormBase Gene ID /WP=CE20443 /TR=Q17436 /GB=CAA97420.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069729(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069729 NCBI Caenorhabditis elegans B0035.6 (B0035.6) mRNA, complete cds. 11/11 None
SNAP00000035836 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11320777:11323311:1 11/11 None
GENEFINDER00000035850 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11320291:11323311:1 11/11 None
B0035.6 ENSEMBL cdna:known chromosome:CEL140:IV:11320771:11323595:1 gene:B0035.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11320782-11323317(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0035.6
Entrez Gene 178047 Entrez gene
SwissProt Q17436 EMBL-EBI
WormBase CE20443 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97420 Hypothetical protein B0035.6 [Caenorhabditis elegans] ref|NP_502130.1| B0035.6 [Caenorhabditis elegans] 0.0
blast CAB60972 Hypothetical protein Y111B2A.3 [Caenorhabditis elegans] ref|NP_499633.1| Y111B2A.3 [Caenorhabditis elegans] 0.0
blast CAE63712 Hypothetical protein CBG08229 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000035850 1 20-39
Sequence
Target Sequence 
>C. ELEGANS:179623_S_AT
actcatgcgtcacagttcagtcacgttcgaatcctcagaacaactggaaaaagtaatgaa
gacggcgtttgaggagaatttcgagatcgcaaacgctggtccacagcgtatcaaagagat
ctctgggaagattttggaggttttcggctcaacctcgtcggaatcggaccacgaccgtat
cgcttcatcgatcatagagctcattccaacagaagaatatgaaaagactgggccaagatg
gagtcatgatataaagaaatcggaaatcattcagcctctggttatcccagtcgaagcaac
gttggaaagctggccaccagctgagtaccgttacgttgctcctggtatcaaggaatctcg
tgactctgcacgacatgaacgcctactacgccagcaacttgcaacaaccaaatctttgga
aatggctcaacttcatcgcgatttgtgggcggaaaacgagaaaaatatggagcattggac
acgcccagcgtccccttgcaatagttcatttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCATGCGTCACAGTTCAGTCACG 80 101 1608 Antisense
TTCAGTCACGTTCGAATCCTCAGAA 245 687 1623 Antisense
TTCGAGATCGCAAACGCTGGTCCAC 346 693 1687 Antisense
TGGAGGTTTTCGGCTCAACCTCGTC 400 549 1742 Antisense
GACCGTATCGCTTCATCGATCATAG 194 383 1780 Antisense
AGCCTCTGGTTATCCCAGTCGAAGC 217 59 1880 Antisense
GCAACGTTGGAAAGCTGGCCACCAG 427 319 1903 Antisense
CGTTACGTTGCTCCTGGTATCAAGG 311 247 1936 Antisense
ATCAAGGAATCTCGTGACTCTGCAC 308 27 1954 Antisense
ATATGGAGCATTGGACACGCCCAGC 80 21 2072 Antisense
GTCCCCTTGCAATAGTTCATTTTTC 483 475 2097 Antisense
Sequence Source Affymetrix Proprietary Database