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[179622_at]

Description F57A8.7 /REP_DB=WormBase Gene ID /WP=CE05988 /TR=Q20919 /GB=CAA94848.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 79.7
(-1.9)
P 		137.3
(1.1)
A 		57.8
(-3)
M 		173.3
(3)
P 		116
B 70.7
(-3)
P 		74.7
(-2.3)
A 		103.5
(3)
P 		74
(-2.4)
P 		33
C 58.5
(-2.8)
M 		89.4
(-1.3)
A 		54.6
(-3)
A 		175.6
(3)
P 		121
avr 69.6
(-3) 		100.5
(-0.4) 		72
(-2.8) 		141
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 67.4
(-0.4)
A 		19.7
(-3)
A 		45.5
(-1.6)
P 		115.1
(2.2)
P 		128.9
(3)
P 		57
(-1)
A 		109
B 57.6
(-1.1)
P 		66.1
(-0.5)
A 		99.9
(2)
P 		98.7
(1.9)
P 		113.1
(3)
P 		32.6
(-3)
A 		81
C 87.3
(0.5)
A 		101.4
(1.7)
M 		64.3
(-1.4)
A 		80.8
(-0)
A 		117.3
(3)
P 		45.1
(-3)
A 		72
avr 70.8
(-0.9) 		62.4
(-1.6) 		69.9
(-1) 		98.2
(1.3) 		119.8
(3) 		44.9
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 29
(2.7)
P 		29.8
(3)
A 		15.1
(-3)
M 		25.4
(1.2)
P 		15
B 22.5
(1.9)
P 		18.5
(-1)
A 		24
(3)
P 		15.8
(-3)
P 		8
C 19.4
(-2.8)
M 		25.7
(0.8)
A 		19
(-3)
A 		29.6
(3)
P 		11
avr 23.6
(1.8) 		24.7
(3) 		19.4
(-3) 		23.6
(1.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 12.4
(-2)
A 		7
(-3)
A 		9.9
(-2.5)
P 		29.2
(1.2)
P 		38.9
(3)
P 		13.9
(-1.7)
A 		32
B 20
(-1.6)
P 		22
(-1.2)
A 		24.3
(-0.8)
P 		26.1
(-0.5)
P 		46
(3)
P 		12.1
(-3)
A 		34
C 32.4
(1.5)
A 		31
(1.2)
M 		16.4
(-2.7)
A 		16.2
(-2.7)
A 		38
(3)
P 		15.1
(-3)
A 		23
avr 21.6
(-1.3) 		20
(-1.6) 		16.9
(-2.3) 		23.8
(-0.8) 		41
(3) 		13.7
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179622_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11817
Sequence Type Exemplar sequence
Representative Public ID F57A8.7 NCBI
Target Description F57A8.7 /REP_DB=WormBase Gene ID /WP=CE05988 /TR=Q20919 /GB=CAA94848.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073185(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073185 NCBI Caenorhabditis elegans F57A8.7 (F57A8.7) mRNA, complete cds. 11/11 None
SNAP00000020530 ENSEMBL cdna:SNAP chromosome:CEL140:V:10079041:10080385:1 11/11 None
GENEFINDER00000020545 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10079041:10080385:1 11/11 None
F57A8.7 ENSEMBL cdna:known chromosome:CEL140:V:10078330:10080385:1 gene:F57A8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10078329-10080385(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57A8.7
Entrez Gene 186432 Entrez gene
SwissProt Q20919 EMBL-EBI
WormBase CE05988 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94848 Hypothetical protein F57A8.7 [Caenorhabditis elegans] emb|CAA94837.1| Hypothetical protein F57A8.7 [Caenorhabditis elegans] ref|NP_505586.1| F57A8.7 [Caenorhabditis elegans] 0.0
blast CAE64014 Hypothetical protein CBG08609 [Caenorhabditis briggsae] 0.0
blast CAA94848 Hypothetical protein F57A8.7 [Caenorhabditis elegans] emb|CAA94837.1| Hypothetical protein F57A8.7 [Caenorhabditis elegans] ref|NP_505586.1| F57A8.7 [Caenorhabditis elegans] 1.0E-149
blast CAE64014 Hypothetical protein CBG08609 [Caenorhabditis briggsae] 1.0E-131
blast CAB03151 Hypothetical protein F58G11.4 [Caenorhabditis elegans] ref|NP_506385.1| F58G11.4 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505586.1 10 7-29,49-71,84-106,159-181,188-206,277-299,312-334,370-392,413-432,436-454
F57A8.7 10 7-29,49-71,84-106,159-181,188-206,277-299,312-334,370-392,413-432,436-454
SNAP00000020530 5 82-104,117-139,175-197,218-237,241-259
GENEFINDER00000020545 5 82-104,117-139,175-197,218-237,241-259
Sequence
Target Sequence 
>C. ELEGANS:179622_AT
gaccactggattcattgccacgattctttatgtactgatcatcttcacaaaattgtcgac
tattgttcgcgacaagatcttcaactcactggttcttcttctcttcgtgtgccatttgct
taccacatactcctggcaattctattctgattctgttttggacgaagaattttcaaatga
aactctaactggatgcgatgatattcatttcacctggtgtgatagtttaacaatttctcc
acaatgggcattttacattggatatattctgagtttcggcctctttatgccattcatcaa
tgtagccaacgcaactctttattcaaaattgttgaatcctgatagtcaaggtacacaaca
aagtttatacgacatttcgaacacaactgcccgaatctttgcaccaattttcatcacatt
gatttatacagtttatggtcctcgccgagtatgggaattcttatgtctcttgcttttgtt
caccactttcctatggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCACTGGATTCATTGCCACGATT 58 385 870 Antisense
AGATCTTCAACTCACTGGTTCTTCT 334 67 944 Antisense
CTTCGTGTGCCATTTGCTTACCACA 525 219 972 Antisense
CCACATACTCCTGGCAATTCTATTC 305 275 992 Antisense
TCTGAGTTTCGGCCTCTTTATGCCA 207 609 1137 Antisense
TGTAGCCAACGCAACTCTTTATTCA 97 561 1170 Antisense
GAACACAACTGCCCGAATCTTTGCA 106 353 1248 Antisense
GAATCTTTGCACCAATTTTCATCAC 244 329 1262 Antisense
GGTCCTCGCCGAGTATGGGAATTCT 218 501 1306 Antisense
ATTCTTATGTCTCTTGCTTTTGTTC 257 11 1326 Antisense
TTTTGTTCACCACTTTCCTATGGAT 187 679 1343 Antisense
Sequence Source Affymetrix Proprietary Database