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[179621_at]

Description ZK40.1 /REP_DB=WormBase Gene ID /WP=CE28186 /TR=Q23087 /GB=AAB04844.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 64      6grp_total > 84      4grp_total > 04      6grp_highest_sub > 04_05_06      6grp_cgc > 77      6grp_high1_sub > In      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 667
1 2 3 4 range
A 699.6
(-0.8)
P 		600.9
(-2.1)
P 		534.8
(-3)
P 		980.5
(3)
P 		446
B 694.6
(-1.7)
P 		574
(-3)
P 		597
(-2.8)
P 		1151
(3)
P 		577
C 690.8
(-0.3)
P 		483.8
(-3)
P 		599.4
(-1.5)
P 		944.9
(3)
P 		461
avr 695
(-1.2) 		552.9
(-3) 		577.1
(-2.7) 		1025.5
(3) 		473

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 617.6
(-1.9)
P 		534.7
(-3)
P 		752.1
(-0.2)
P 		911.7
(1.9)
P 		937.3
(2.2)
P 		995.2
(3)
P 		461
B 573.4
(-3)
P 		584.8
(-2.8)
P 		838.9
(1.3)
P 		916
(2.6)
P 		931.5
(2.9)
P 		940.1
(3)
P 		367
C 610.9
(-2.5)
P 		572.8
(-3)
P 		788.7
(-0.2)
P 		1037.2
(3)
P 		1019.6
(2.8)
P 		923.3
(1.5)
P 		464
avr 600.6
(-2.5) 		564.1
(-3) 		793.2
(0.4) 		955
(2.9) 		962.8
(3) 		952.9
(2.9) 		399
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 254.7
(3)
P 		130.4
(-3)
P 		139.8
(-2.5)
P 		143.5
(-2.4)
P 		124
B 221.5
(1.7)
P 		141.8
(-2.8)
P 		138.3
(-3)
P 		245.3
(3)
P 		107
C 228.7
(3)
P 		139.1
(-3)
P 		208.9
(1.7)
P 		159.3
(-1.6)
P 		90
avr 235
(3) 		137.1
(-3) 		162.3
(-1.5) 		182.7
(-0.2) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 113.8
(-3)
P 		190.2
(-0.3)
P 		163.8
(-1.2)
P 		231.2
(1.2)
P 		282.8
(3)
P 		242.3
(1.6)
P 		169
B 199.5
(-2.8)
P 		194.7
(-3)
P 		203.7
(-2.7)
P 		242.6
(-1.4)
P 		378.4
(3)
P 		350.6
(2.1)
P 		184
C 226.4
(-1)
P 		174.8
(-3)
P 		200.7
(-2)
P 		208.6
(-1.7)
P 		329.9
(3)
P 		309.1
(2.2)
P 		155
avr 179.9
(-3) 		186.6
(-2.7) 		189.4
(-2.6) 		227.5
(-1.1) 		330.4
(3) 		300.7
(1.8) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179621_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12290
Sequence Type Exemplar sequence
Representative Public ID ZK40.1 NCBI
Target Description ZK40.1 /REP_DB=WormBase Gene ID /WP=CE28186 /TR=Q23087 /GB=AAB04844.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072243(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072243 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-9) (acl-9) mRNA, complete cds. 11/11 None
SNAP00000016522 ENSEMBL cdna:SNAP chromosome:CEL140:V:6455821:6457334:1 11/11 None
GENEFINDER00000016525 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6454666:6457334:1 11/11 None
ZK40.1 ENSEMBL cdna:known chromosome:CEL140:V:6455820:6457549:1 gene:ZK40.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6455339-6457334(+) 99.83 99.83
Public Domain and Genome References
Gene Title
Gene Symbol acl-9
Ensembl ZK40.1
Entrez Gene 179032 Entrez gene
SwissProt Q23087 EMBL-EBI
WormBase CE28186 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04844 Acyltransferase-like protein 9 [Caenorhabditis elegans] ref|NP_504644.1| ACyLtransferase-like family member (acl-9) [Caenorhabditis elegans] 0.0
blast CAE71886 Hypothetical protein CBG18941 [Caenorhabditis briggsae] 0.0
blast CAE71885 Hypothetical protein CBG18940 [Caenorhabditis briggsae] 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 1.2E-33
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 1.2E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504644.1 5 28-50,62-84,132-151,330-347,351-373
ZK40.1 5 28-50,62-84,132-151,330-347,351-373
SNAP00000016522 5 28-50,62-84,132-151,330-347,351-373
GENEFINDER00000016525 7 69-91,159-181,210-232,244-266,314-333,512-529,533-555
Sequence
Target Sequence 
>C. ELEGANS:179621_AT
aagggactcgttcactatcaatatgttcttcatccacgtgtaactggtttcgtgcacatt
gtgcaagcaatgagaagagccaataatatcaaatacatttatgatgtcagtattggattc
ggagatgccattgtacaatcagagttggacattttcgcacacggagtttgtccgaaagag
gtcttctatcaagttatcaaatacccaatcgaggcaattccgcaaactgatgaagcttta
ggacagtggcttgtcaatttatggaggaataaagaagaaaaacttaagagattctacgaa
atgccacgtaacgtgcgacagttcccagacacaccggatggagttgaatacgagctggac
aacaacacagaccgcgcacaaaaagggcttattggattctggtgtttcactactgttttc
tggatgtttatgttctttgagagtgccttcatgttctactgggcgattatagcatgtgtc
ttctacgcagcagttcacaagttctacggaggacttgaattcctcgcaatcgaccgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGGACTCGTTCACTATCAATATG 173 159 613 Antisense
ATATGTTCTTCATCCACGTGTAACT 235 21 633 Antisense
ACGTGTAACTGGTTTCGTGCACATT 407 95 648 Antisense
GGACATTTTCGCACACGGAGTTTGT 218 523 759 Antisense
AAATACCCAATCGAGGCAATTCCGC 6 117 811 Antisense
TGCCACGTAACGTGCGACAGTTCCC 301 583 914 Antisense
GAGCTGGACAACAACACAGACCGCG 409 387 964 Antisense
CTGGTGTTTCACTACTGTTTTCTGG 399 241 1011 Antisense
AGTGCCTTCATGTTCTACTGGGCGA 254 59 1054 Antisense
TGTCTTCTACGCAGCAGTTCACAAG 256 559 1089 Antisense
TGAATTCCTCGCAATCGACCGATTT 201 575 1128 Antisense
Sequence Source Affymetrix Proprietary Database