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[179620_s_at]

Description T10G3.3 /REP_DB=WormBase Gene ID /WP=CE23974 /TR=P92020 /GB=CAB03326.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      6grp_highest_nonorm > 42      6grp_total > 32      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 753
1 2 3 4 range
A 512.6
(1.2)
P 		605.3
(2.1)
P 		697.7
(3)
P 		66.3
(-3)
A 		631
B 528.9
(1.6)
P 		673.9
(3)
P 		655.7
(2.8)
P 		58.2
(-3)
A 		616
C 571.9
(1.1)
P 		682.2
(2)
P 		807.1
(3)
P 		54.4
(-3)
A 		753
avr 537.8
(1.3) 		653.8
(2.4) 		720.2
(3) 		59.6
(-3) 		661

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1208
1 2 3 4 5 6 range
A 1198.4
(2.3)
P 		864.5
(0.6)
P 		1344.9
(3)
P 		847.6
(0.5)
P 		431.2
(-1.5)
P 		136.5
(-3)
P 		1208
B 1257.5
(2.7)
P 		1131.7
(2)
P 		1315.9
(3)
P 		754.9
(-0.1)
P 		579.9
(-1)
P 		212.4
(-3)
P 		1104
C 1103.4
(2.4)
P 		1195.6
(3)
P 		913.7
(1.2)
P 		989.9
(1.7)
P 		449.6
(-1.8)
P 		255.5
(-3)
P 		940
avr 1186.4
(3) 		1063.9
(2.2) 		1191.5
(3) 		864.1
(1) 		486.9
(-1.3) 		201.5
(-3) 		990
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 186.6
(3)
P 		131.4
(1.1)
P 		182.4
(2.9)
P 		9.7
(-3)
A 		177
B 168.7
(3)
P 		166.4
(2.9)
P 		151.9
(2.4)
P 		12.4
(-3)
A 		156
C 189.3
(1)
P 		196.1
(1.1)
P 		281.3
(3)
P 		9.2
(-3)
A 		272
avr 181.5
(2.3) 		164.6
(1.7) 		205.2
(3) 		10.4
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 220.9
(1.1)
P 		307.5
(3)
P 		292.9
(2.7)
P 		215
(1)
P 		130.1
(-0.9)
P 		33.2
(-3)
P 		274
B 437.6
(3)
P 		376.7
(2)
P 		319.5
(1)
P 		200
(-1)
P 		235.6
(-0.4)
P 		79.2
(-3)
P 		358
C 409
(3)
P 		364.8
(2.2)
P 		232.5
(-0.3)
P 		199.1
(-0.9)
P 		145.5
(-1.9)
P 		85.5
(-3)
P 		324
avr 355.8
(3) 		349.7
(2.9) 		281.6
(1.5) 		204.7
(-0.1) 		170.4
(-0.8) 		66
(-3) 		290
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179620_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13185
Sequence Type Exemplar sequence
Representative Public ID T10G3.3 NCBI
Target Description T10G3.3 /REP_DB=WormBase Gene ID /WP=CE23974 /TR=P92020 /GB=CAB03326.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073945(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073945 NCBI Caenorhabditis elegans T10G3.3 (T10G3.3) mRNA, complete cds. 11/11 None
SNAP00000037916 ENSEMBL cdna:SNAP chromosome:CEL140:V:13489721:13492217:-1 11/11 None
GENEFINDER00000037921 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13489721:13492217:-1 11/11 None
T10G3.3 ENSEMBL cdna:known chromosome:CEL140:V:13489686:13492217:-1 gene:T10G3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13489720-13492576(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10G3.3
Entrez Gene 179831 Entrez gene
SwissProt P92020 EMBL-EBI
WormBase CE37988 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03326 Hypothetical protein T10G3.3 [Caenorhabditis elegans] ref|NP_506346.2| T10G3.3 [Caenorhabditis elegans] 1.0E-170
blast CAE62577 Hypothetical protein CBG06690 [Caenorhabditis briggsae] 1.0E-150
blast AAK18279 major allergen [Brugia malayi] 1.0E-22
Sequence
Target Sequence 
>C. ELEGANS:179620_S_AT
aatatctgattgcatttcggattcaggaattccggtaccacttaatggatcacttgtttt
gagtggaatcaagtatgaatgcgtcatggattcgaatggaaaagtttcacttcacagaga
tgctgctccacaacaaaatacagttactagggcaaccacgttgagtcccgtcgaaattct
tggtccaatgtttaagaactttggagcaatggatgtcgatgatcttcttgctccaaaacc
tgcagatcctgtgcaagaagttccagctgccgaacaaatgatggagacgtcagagacaac
ctgcgattttgaaggagaaaataggaagtctggagatatctgggtatcagacggaatttt
cacgaaaaaatgcacagacgaaggtgctacagtaatcttgaactgcattgtggacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATCTGATTGCATTTCGGATTCA 507 173 528 Antisense
CAGGAATTCCGGTACCACTTAATGG 80 207 551 Antisense
CACTTCACAGAGATGCTGCTCCACA 457 197 635 Antisense
ACTAGGGCAACCACGTTGAGTCCCG 500 1 673 Antisense
TGAGTCCCGTCGAAATTCTTGGTCC 514 563 689 Antisense
GGATGTCGATGATCTTCTTGCTCCA 703 513 738 Antisense
TCCAAAACCTGCAGATCCTGTGCAA 104 589 759 Antisense
GATCCTGTGCAAGAAGTTCCAGCTG 268 417 772 Antisense
GAGACGTCAGAGACAACCTGCGATT 667 393 811 Antisense
GACGAAGGTGCTACAGTAATCTTGA 635 379 904 Antisense
GTAATCTTGAACTGCATTGTGGACG 248 463 919 Antisense
Sequence Source Affymetrix Proprietary Database