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[179619_at]

Description T12G3.5 /REP_DB=WormBase Gene ID /WP=CE06441 /TR=Q22438 /GB=CAA92984.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 03      4grp_high_8_8 > 45      6grp_highest_nonorm > 57      6grp_total > 52      4grp_total > 42      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1513
1 2 3 4 range
A 1985.8
(-3)
P 		2841.3
(3)
P 		2607.2
(1.4)
P 		2443.6
(0.2)
P 		856
B 2103.8
(-3)
P 		3131.1
(3)
P 		3000.3
(2.2)
P 		2351.4
(-1.6)
P 		1027
C 2492.7
(-1.7)
P 		3499
(3)
P 		2848.9
(-0.1)
P 		2227.6
(-3)
P 		1271
avr 2194.1
(-3) 		3157.1
(3) 		2818.8
(0.9) 		2340.9
(-2.1) 		963

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1443
1 2 3 4 5 6 range
A 2140.4
(-1.2)
P 		2216.2
(-0.8)
P 		2956.3
(3)
P 		2415.8
(0.2)
P 		2119.6
(-1.3)
P 		1785.6
(-3)
P 		1171
B 2220.3
(-2.4)
P 		2131.1
(-2.9)
P 		3228.8
(3)
P 		2169.2
(-2.7)
P 		2473.5
(-1)
P 		2107.5
(-3)
P 		1121
C 1970.8
(-2.1)
P 		2338.5
(0.3)
P 		2244.3
(-0.3)
P 		2753
(3)
P 		1828.8
(-3)
P 		2382
(0.6)
P 		924
avr 2110.5
(-2.8) 		2228.6
(-1.9) 		2809.8
(3) 		2446
(-0) 		2140.6
(-2.6) 		2091.7
(-3) 		718
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 648
1 2 3 4 range
A 723
(3)
P 		616.8
(1.3)
P 		681.6
(2.3)
P 		357.7
(-3)
P 		365
B 670.9
(0.7)
P 		773.3
(3)
P 		695.2
(1.3)
P 		501.1
(-3)
P 		272
C 825.2
(1.3)
P 		1006
(3)
P 		992.9
(2.9)
P 		375.6
(-3)
P 		630
avr 739.7
(2.1) 		798.7
(3) 		789.9
(2.9) 		411.5
(-3) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 610
1 2 3 4 5 6 range
A 394.6
(-3)
P 		788.2
(3)
P 		643.8
(0.8)
P 		612.7
(0.3)
P 		639.6
(0.7)
P 		434.7
(-2.4)
P 		394
B 772.5
(-0.2)
P 		709.4
(-1.1)
P 		784
(-0.1)
P 		574.6
(-3)
P 		1005
(3)
P 		785.9
(-0.1)
P 		430
C 730.5
(1.4)
P 		713.6
(0.9)
P 		571.2
(-2.6)
P 		553.6
(-3)
P 		591.8
(-2.1)
P 		797.4
(3)
P 		244
avr 632.5
(-1.1) 		737.1
(2.7) 		666.3
(0.1) 		580.3
(-3) 		745.5
(3) 		672.7
(0.4) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179619_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9762
Sequence Type Exemplar sequence
Representative Public ID T12G3.5 NCBI
Target Description T12G3.5 /REP_DB=WormBase Gene ID /WP=CE06441 /TR=Q22438 /GB=CAA92984.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069878(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069878 NCBI Caenorhabditis elegans T12G3.5 (T12G3.5) mRNA, complete cds. 11/11 None
SNAP00000042346 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12031298:12031997:1 11/11 None
GENEFINDER00000042358 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12031298:12031997:1 11/11 None
T12G3.5 ENSEMBL cdna:known chromosome:CEL140:IV:12031285:12032115:1 gene:T12G3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12031303-12032003(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12G3.5
Entrez Gene 188457 Entrez gene
SwissProt Q22438 EMBL-EBI
WormBase CE06441 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92984 Hypothetical protein T12G3.5 [Caenorhabditis elegans] ref|NP_502279.1| T12G3.5 [Caenorhabditis elegans] 1.0E-117
blast CAE62165 Hypothetical protein CBG06212 [Caenorhabditis briggsae] 1.0E-113
blast EAL34329 GA12045-PA [Drosophila pseudoobscura] 6.0E-14
Sequence
Target Sequence 
>C. ELEGANS:179619_AT
attccaattctctatcacgattcacatcaatcgtgagaacgacatcgatccgcggatttc
atgatcgaagctcagtgccacgggtcgtcgatgatcgcgaaaagtcttcagcaaaatata
atgatgccggttacacgttccgttatcaccaacaaggcgtagatccgctacctcgtattc
ctgattgtaaagtcccagtagcacgtccagcatacaaagttcgtgatcaatggagtgacg
aagctgctcgcttcggtcaaaacgactatattgatcttctcggtgatggatcagttcatc
ctgcacaacttcaatatcacacgccaacttggcttcgtggattcccaggacaacataaag
caaatgagctcatcaaacttattcactatcgaaatctgtatgatgctaaattgaaacaaa
attcaccgaaaagatggcacgagctaagaaagagaatcaagtatttaatgatgcagcaca
attataacaaacaggatgagatcggtcgagaacgcaacttgggattatgggaagaggagc
ccgactacacttacaaggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCAATTCTCTATCACGATTCAC 547 7 17 Antisense
GAGAACGACATCGATCCGCGGATTT 278 391 51 Antisense
TCATGATCGAAGCTCAGTGCCACGG 544 621 75 Antisense
AATGATGCCGGTTACACGTTCCGTT 434 159 136 Antisense
CACGTTCCGTTATCACCAACAAGGC 626 197 150 Antisense
CGCTACCTCGTATTCCTGATTGTAA 472 255 182 Antisense
TTGTAAAGTCCCAGTAGCACGTCCA 363 707 201 Antisense
GATGGATCAGTTCATCCTGCACAAC 351 407 301 Antisense
CAACTTCAATATCACACGCCAACTT 436 187 322 Antisense
GAGCTCATCAAACTTATTCACTATC 459 387 382 Antisense
GAGCCCGACTACACTTACAAGGACA 581 383 553 Antisense
Sequence Source Affymetrix Proprietary Database