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[179618_s_at]

Description W09G3.5 /REP_DB=WormBase Gene ID /WP=CE16571 /TR=O18189 /GB=CAB04952.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 1.4
(-3)
A 		35.2
(3)
A 		2.3
(-2.8)
A 		20.5
(0.4)
A 		34
B 2
(-3)
A 		2.5
(-2.9)
A 		29.3
(3)
A 		5.3
(-2.3)
A 		27
C 3.3
(-3)
A 		11.9
(-0.1)
A 		8.1
(-1.4)
A 		20.8
(3)
A 		18
avr 2.2
(-3) 		16.5
(3) 		13.2
(1.6) 		15.5
(2.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 2
(-2.9)
A 		17.9
(-0.6)
A 		42.3
(3)
A 		1.6
(-3)
A 		8
(-2.1)
A 		24.7
(0.4)
A 		41
B 6
(-3)
A 		22.2
(1.5)
A 		19
(0.6)
A 		27.6
(3)
A 		19.3
(0.7)
A 		18.7
(0.5)
A 		22
C 27.6
(2.9)
A 		20
(1)
A 		3.6
(-3)
A 		5.4
(-2.6)
A 		19.8
(1)
A 		27.9
(3)
P 		24
avr 11.9
(-2.8) 		20
(1.1) 		21.6
(1.9) 		11.5
(-3) 		15.7
(-1) 		23.8
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.5
(-3)
A 		7.6
(3)
A 		0.6
(-2.9)
A 		3
(-0.9)
A 		7
B 0.6
(-3)
A 		0.6
(-3)
A 		6.8
(3)
A 		1.1
(-2.5)
A 		6
C 1.1
(-3)
A 		3.4
(2.8)
A 		2.8
(1.3)
A 		3.5
(3)
A 		2
avr 0.7
(-3) 		3.9
(3) 		3.4
(2.1) 		2.5
(0.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A 		6.4
(1.1)
A 		9.2
(3)
A 		0.4
(-3)
A 		2.4
(-1.6)
A 		6
(0.8)
A 		9
B 2.1
(-3)
A 		7.4
(2.6)
A 		4.6
(-0.4)
A 		7.3
(2.5)
A 		7.8
(3)
A 		7
(2.2)
A 		6
C 10.2
(3)
A 		6.1
(0.4)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		6.4
(0.5)
A 		9.3
(2.4)
P 		9
avr 4.2
(-1.3) 		6.6
(1.9) 		4.9
(-0.3) 		2.9
(-3) 		5.5
(0.5) 		7.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179618_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.576
Sequence Type Exemplar sequence
Representative Public ID W09G3.5 NCBI
Target Description W09G3.5 /REP_DB=WormBase Gene ID /WP=CE16571 /TR=O18189 /GB=CAB04952.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061018 NCBI Caenorhabditis elegans W09G3.5 (W09G3.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000042891 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13837780:13839725:1 11/11 None
SNAP00000042889 ENSEMBL cdna:SNAP chromosome:CEL140:I:13838465:13840014:1 10/11 None
W09G3.5 ENSEMBL cdna:known chromosome:CEL140:I:13838465:13839730:1 gene:W09G3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13838395-13839656(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09G3.5
Entrez Gene 173251 Entrez gene
WormBase CE16571 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493419 W09G3.5 [Caenorhabditis elegans] 1.0E-180
blast NP_493419 W09G3.5 [Caenorhabditis elegans] 1.0E-168
blast NP_493419 W09G3.5 [Caenorhabditis elegans] 1.0E-165
blast CAB62781 Hypothetical protein C08F11.5 [Caenorhabditis elegans] ref|NP_502631.1| C08F11.5 [Caenorhabditis elegans] 2.0E-14
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 1.0E-12
blast CAB62781 Hypothetical protein C08F11.5 [Caenorhabditis elegans] ref|NP_502631.1| C08F11.5 [Caenorhabditis elegans] 4.0E-9
blast CAB62781 Hypothetical protein C08F11.5 [Caenorhabditis elegans] ref|NP_502631.1| C08F11.5 [Caenorhabditis elegans] 5.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.7E-21
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.7E-21
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.2E-11
Sequence
Target Sequence 
>C. ELEGANS:179618_S_AT
gttactctctgccgaaaactttgaagaatggaacatcacttcagatgatttggatgcgtt
tccgacatttgtcgatttactcggacaaccgaagcttgctgatgacaggcgtggatggat
caaatacgactttgaggtggaagtgccgagcggcggaaagctcgttttcgagtatcacaa
gacaaaggagtctcgtttaaatattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACTCTCTGCCGAAAACTTTGAA 220 447 741 Antisense
GGAACATCACTTCAGATGATTTGGA 539 529 770 Antisense
TTTGGATGCGTTTCCGACATTTGTC 336 665 789 Antisense
CGACATTTGTCGATTTACTCGGACA 438 251 803 Antisense
CTCGGACAACCGAAGCTTGCTGATG 441 231 820 Antisense
GAAGCTTGCTGATGACAGGCGTGGA 645 341 831 Antisense
AGGCGTGGATGGATCAAATACGACT 486 49 847 Antisense
TGAGGTGGAAGTGCCGAGCGGCGGA 634 551 873 Antisense
AGCGGCGGAAAGCTCGTTTTCGAGT 603 77 889 Antisense
CTCGTTTTCGAGTATCACAAGACAA 143 233 901 Antisense
CAAAGGAGTCTCGTTTAAATATTCA 598 159 923 Antisense
Sequence Source Affymetrix Proprietary Database