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[179617_at]

Description W09G3.5 /REP_DB=WormBase Gene ID /WP=CE16571 /TR=O18189 /GB=CAB04952.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 26.2
(-1.4)
A 		8.6
(-3)
A 		9.7
(-2.9)
A 		74.2
(3)
A 		66
B 8.5
(-3)
A 		9
(-3)
A 		20.3
(-2.1)
A 		87.8
(3)
A 		79
C 36.8
(-1.6)
A 		11.6
(-2.7)
A 		4.8
(-3)
A 		146.6
(3)
A 		142
avr 23.8
(-2.1) 		9.7
(-3) 		11.6
(-2.9) 		102.9
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 4.9
(-2.9)
A 		32.9
(2.9)
A 		33.5
(3)
A 		24.7
(1.2)
A 		4.2
(-3)
A 		9.4
(-1.9)
A 		29
B 6.2
(-2.7)
A 		7.9
(-2.5)
A 		15.4
(-1.4)
A 		4.5
(-3)
A 		22.5
(-0.3)
A 		45
(3)
A 		41
C 17.3
(-1.1)
A 		38.3
(2.2)
A 		31.1
(1.1)
A 		43.5
(3)
A 		4.7
(-3)
A 		30.4
(1)
A 		39
avr 9.5
(-3) 		26.4
(2.4) 		26.7
(2.5) 		24.2
(1.7) 		10.5
(-2.7) 		28.3
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 9.5
(2.1)
A 		1.9
(-3)
A 		2.5
(-2.6)
A 		10.9
(3)
A 		9
B 2.7
(-2.8)
A 		2.2
(-3)
A 		4.7
(-2.1)
A 		18.7
(3)
A 		17
C 12.2
(-0.3)
A 		3.3
(-2.6)
A 		1.7
(-3)
A 		24.7
(3)
A 		23
avr 8.1
(-0.8) 		2.5
(-3) 		3
(-2.8) 		18.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.9
(-3)
A 		11.7
(3)
A 		7.3
(0.6)
A 		6.3
(0)
A 		1.3
(-2.8)
A 		2.3
(-2.2)
A 		11
B 2.2
(-2.6)
A 		2.6
(-2.5)
A 		3.7
(-2)
A 		1.2
(-3)
A 		9.1
(0)
A 		16.8
(3)
A 		16
C 6.4
(-0.1)
A 		11.7
(3)
A 		7.9
(0.8)
A 		8.8
(1.3)
A 		1.5
(-3)
A 		10.2
(2.1)
A 		10
avr 3.2
(-3) 		8.7
(2) 		6.3
(-0.2) 		5.4
(-1) 		4
(-2.3) 		9.8
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.576
Sequence Type Exemplar sequence
Representative Public ID W09G3.5 NCBI
Target Description W09G3.5 /REP_DB=WormBase Gene ID /WP=CE16571 /TR=O18189 /GB=CAB04952.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061018 NCBI Caenorhabditis elegans W09G3.5 (W09G3.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000042891 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13837780:13839725:1 11/11 None
SNAP00000042889 ENSEMBL cdna:SNAP chromosome:CEL140:I:13838465:13840014:1 11/11 None
W09G3.5 ENSEMBL cdna:known chromosome:CEL140:I:13838465:13839730:1 gene:W09G3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13838395-13839656(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09G3.5
Entrez Gene 173251 Entrez gene
WormBase CE16571 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493419 W09G3.5 [Caenorhabditis elegans] 1.0E-180
blast NP_493419 W09G3.5 [Caenorhabditis elegans] 1.0E-168
blast NP_493419 W09G3.5 [Caenorhabditis elegans] 1.0E-165
blast CAB62781 Hypothetical protein C08F11.5 [Caenorhabditis elegans] ref|NP_502631.1| C08F11.5 [Caenorhabditis elegans] 2.0E-14
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 1.0E-12
blast CAB62781 Hypothetical protein C08F11.5 [Caenorhabditis elegans] ref|NP_502631.1| C08F11.5 [Caenorhabditis elegans] 4.0E-9
blast CAB62781 Hypothetical protein C08F11.5 [Caenorhabditis elegans] ref|NP_502631.1| C08F11.5 [Caenorhabditis elegans] 5.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.7E-21
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.7E-21
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.2E-11
Sequence
Target Sequence 
>C. ELEGANS:179617_AT
tcaattcctgaaatctctgggctttcttggcttcaagctttccgtcagcgagatggattt
gcggctcgacgaacatacacattttctgccaatcatttgttgtgtgaagcctggagtttt
ggaccgtttagatttggatttgaatatgaaaagcgaggaagcggtgtacaagaagcttgt
cgaatcggaccaatggaagcaactcggatatctgagttccaccgtttccacttctttcaa
gtttgagcacttggttcatcttccaaactttcgtgctcatctggacggacaattcattag
agaagatgtgaagttagcgttgaatacgttactctctgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTCCTGAAATCTCTGGGCTTT 356 633 414 Antisense
CTTTCTTGGCTTCAAGCTTTCCGTC 605 221 435 Antisense
AAGCTTTCCGTCAGCGAGATGGATT 482 149 448 Antisense
AGATGGATTTGCGGCTCGACGAACA 370 67 464 Antisense
AACATACACATTTTCTGCCAATCAT 54 139 485 Antisense
GTGAAGCCTGGAGTTTTGGACCGTT 16 477 517 Antisense
GAAGCTTGTCGAATCGGACCAATGG 595 341 585 Antisense
TCGGATATCTGAGTTCCACCGTTTC 519 605 617 Antisense
GAGCACTTGGTTCATCTTCCAAACT 519 389 658 Antisense
ACTTTCGTGCTCATCTGGACGGACA 684 101 680 Antisense
GCGTTGAATACGTTACTCTCTGCCG 531 291 730 Antisense
Sequence Source Affymetrix Proprietary Database