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[179616_at]

Description R07H5.1 /REP_DB=WormBase Gene ID /WP=CE12550 /TR=Q93930 /GB=CAB03225.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 97      6grp_total > 68      4grp_total > 08      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1339
1 2 3 4 range
A 849.3
(-3)
P 		1029.9
(-2.1)
P 		991.8
(-2.3)
P 		2101.8
(3)
P 		1253
B 762.9
(-3)
P 		817.1
(-2.7)
P 		999.5
(-1.7)
P 		1852.4
(3)
P 		1090
C 935.1
(-2.6)
P 		865.5
(-3)
P 		1111.6
(-1.6)
P 		1931
(3)
P 		1066
avr 849.1
(-3) 		904.2
(-2.7) 		1034.3
(-2) 		1961.7
(3) 		1113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1151
1 2 3 4 5 6 range
A 970.3
(-1.4)
P 		715.3
(-3)
P 		750.7
(-2.8)
P 		736.7
(-2.9)
P 		779.1
(-2.6)
P 		1697.3
(3)
P 		982
B 896.8
(-0.5)
P 		545.9
(-3)
P 		786.7
(-1.3)
P 		634.2
(-2.4)
P 		798.6
(-1.2)
P 		1386.6
(3)
P 		841
C 863.8
(-1.4)
P 		601.2
(-3)
P 		796.3
(-1.8)
P 		695.5
(-2.4)
P 		837.2
(-1.6)
P 		1599.9
(3)
P 		999
avr 910.3
(-1.2) 		620.8
(-3) 		777.9
(-2) 		688.8
(-2.6) 		805
(-1.8) 		1561.3
(3) 		941
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 309.2
(3)
P 		223.6
(-3)
P 		259.3
(-0.5)
P 		307.7
(2.9)
P 		86
B 243.3
(-1.7)
P 		201.8
(-3)
P 		231.6
(-2.1)
P 		394.7
(3)
P 		193
C 309.6
(-0.4)
P 		248.8
(-3)
P 		387.4
(3)
P 		325.6
(0.3)
P 		139
avr 287.4
(0.2) 		224.7
(-3) 		292.8
(0.5) 		342.7
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 178.9
(-2.6)
P 		254.4
(-0.8)
P 		163.5
(-3)
P 		186.8
(-2.4)
P 		235.1
(-1.3)
P 		413.2
(3)
P 		250
B 312
(-0.5)
P 		181.7
(-2.8)
P 		191
(-2.6)
P 		168
(-3)
P 		324.5
(-0.3)
P 		517
(3)
P 		349
C 320.2
(-0.3)
P 		183.4
(-2.3)
P 		202.7
(-2)
P 		139.9
(-3)
P 		270.9
(-1)
P 		535.6
(3)
P 		396
avr 270.4
(-1) 		206.5
(-2.2) 		185.7
(-2.6) 		164.9
(-3) 		276.8
(-0.9) 		488.6
(3) 		324
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179616_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8650
Sequence Type Exemplar sequence
Representative Public ID R07H5.1 NCBI
Target Description R07H5.1 /REP_DB=WormBase Gene ID /WP=CE12550 /TR=Q93930 /GB=CAB03225.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069696(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069696 NCBI Caenorhabditis elegans PeRoXisome assembly factor family member (prx-14) (prx-14) mRNA, complete cds. 11/11 None
SNAP00000030258 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11183117:11183991:1 11/11 None
GENEFINDER00000030271 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11183117:11184582:1 11/11 None
R07H5.1 ENSEMBL cdna:known chromosome:CEL140:IV:11183110:11184066:1 gene:R07H5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11183122-11183997(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol prx-14
Ensembl R07H5.1
Entrez Gene 178026 Entrez gene
SwissProt Q93930 EMBL-EBI
WormBase CE12550 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5777 peroxisome inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03225 Hypothetical protein R07H5.1 [Caenorhabditis elegans] ref|NP_502097.1| PeRoXisome assembly factor family member (prx-14) [Caenorhabditis elegans] 1.0E-119
blast CAB03225 Hypothetical protein R07H5.1 [Caenorhabditis elegans] ref|NP_502097.1| PeRoXisome assembly factor family member (prx-14) [Caenorhabditis elegans] 1.0E-115
blast CAE62019 Hypothetical protein CBG06028 [Caenorhabditis briggsae] 1.0E-103
blast CAE62019 Hypothetical protein CBG06028 [Caenorhabditis briggsae] 3.0E-99
blast EAA11575 ENSANGP00000020646 [Anopheles gambiae str. PEST] ref|XP_316300.2| ENSANGP00000020646 [Anopheles gambiae str. PEST] 8.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR006785 EMBL-EBI Peroxisomal membrane anchor protein (Pex14p) 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:179616_AT
gcatctattccgccggagcagttgagaagtcaaattggaacagagaatatgattccaata
ggaggtcatccgcaaatgatgattgctccaaaacagaatggaatagtatcatttgcacaa
tcagctgtggtacttggatcgatttcatatgctggatatcgattcgtccgatcatatgtt
ctgcccagattcttcgatattcctgatccagcaacagaggaaattcgtcaactgcaatca
caagtcgacgatcttcagaattcaataaaattcataatggattctgtttcgcaaacaaca
caacagcttgcaacacaacaatcagaaatttcaagagccctctactcagttgctaacaga
gatgctgatttgaatcgggttgagagcggaatttccacgataaaaagtttacttctcagt
caacataattttgctccaatcgtaacacctagtgttacttcatcaattccatcatggcag
cagagtgcaactccaacttctgcaacatcaatcaccacaactacaacttctgaagcagct
tccggatatgcaactcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCTATTCCGCCGGAGCAGTTGA 405 309 169 Antisense
GCTGTGGTACTTGGATCGATTTCAT 337 295 292 Antisense
GATTCGTCCGATCATATGTTCTGCC 510 431 329 Antisense
CAGATTCTTCGATATTCCTGATCCA 150 207 354 Antisense
GGAAATTCGTCAACTGCAATCACAA 209 527 387 Antisense
TTTCAAGAGCCCTCTACTCAGTTGC 519 667 497 Antisense
TGCTCCAATCGTAACACCTAGTGTT 700 581 600 Antisense
CCTAGTGTTACTTCATCAATTCCAT 392 267 616 Antisense
CAGAGTGCAACTCCAACTTCTGCAA 515 205 649 Antisense
ACTTCTGCAACATCAATCACCACAA 661 103 664 Antisense
AGCAGCTTCCGGATATGCAACTCCT 534 77 702 Antisense
Sequence Source Affymetrix Proprietary Database