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[179615_at]

Description T09F5.3 /REP_DB=WormBase Gene ID /WP=CE16375 /TR=O18078 /GB=CAB05810.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 11      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 6.2
(-3)
A 		10.4
(-2.7)
A 		10
(-2.7)
A 		96.5
(3)
A 		90
B 6.7
(-2.6)
A 		39.9
(3)
A 		7.4
(-2.5)
A 		4.4
(-3)
A 		36
C 34.4
(-0.6)
A 		7.4
(-2.7)
A 		3
(-3)
A 		81.8
(3)
A 		79
avr 15.8
(-2) 		19.2
(-1.6) 		6.8
(-3) 		60.9
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 67.5
(3)
A 		3.4
(-2.9)
A 		19.8
(-1.4)
A 		2.6
(-3)
A 		6.1
(-2.7)
A 		3.4
(-2.9)
A 		65
B 35.6
(3)
A 		7
(-2.9)
A 		6.7
(-3)
A 		14.2
(-1.4)
A 		9.1
(-2.5)
A 		7.6
(-2.8)
A 		29
C 3.1
(-3)
A 		19.3
(-0.1)
A 		36.5
(3)
A 		7.2
(-2.3)
A 		3.4
(-2.9)
A 		30.1
(1.9)
A 		33
avr 35.4
(3) 		9.9
(-2.2) 		21
(0) 		8
(-2.6) 		6.2
(-3) 		13.7
(-1.5) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.3
(-3)
A 		2.3
(-3)
A 		2.6
(-2.8)
A 		14.1
(3)
A 		12
B 2.1
(-2.2)
A 		9.9
(3)
A 		1.7
(-2.5)
A 		0.9
(-3)
A 		9
C 11.4
(1.9)
A 		2.1
(-2.5)
A 		1
(-3)
A 		13.8
(3)
A 		13
avr 5.3
(-0.3) 		4.8
(-0.7) 		1.8
(-3) 		9.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 12.5
(3)
A 		1.2
(-2.7)
A 		4.3
(-1.2)
A 		0.7
(-3)
A 		1.8
(-2.4)
A 		0.8
(-2.9)
A 		12
B 12.4
(3)
A 		2.3
(-2.6)
A 		1.6
(-3)
A 		3.8
(-1.8)
A 		3.7
(-1.8)
A 		2.8
(-2.3)
A 		11
C 1.2
(-2.9)
A 		5.9
(0.2)
A 		9.3
(2.5)
A 		1.5
(-2.7)
A 		1.1
(-3)
A 		10.1
(3)
A 		9
avr 8.7
(3) 		3.1
(-2) 		5.1
(-0.2) 		2
(-3) 		2.2
(-2.8) 		4.6
(-0.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179615_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12733
Sequence Type Exemplar sequence
Representative Public ID T09F5.3 NCBI
Target Description T09F5.3 /REP_DB=WormBase Gene ID /WP=CE16375 /TR=O18078 /GB=CAB05810.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074341(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074341 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-45) (str-45) mRNA, complete cds. 11/11 None
SNAP00000036439 ENSEMBL cdna:SNAP chromosome:CEL140:V:15161577:15162712:1 9/11 None
GENEFINDER00000036447 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15161577:15165017:1 9/11 None
T09F5.3 ENSEMBL cdna:known chromosome:CEL140:V:15161577:15162888:1 gene:T09F5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15161576-15162888(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-45
Ensembl T09F5.3
Entrez Gene 188343 Entrez gene
SwissProt O18078 EMBL-EBI
WormBase CE16375 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05810 Hypothetical protein T09F5.3 [Caenorhabditis elegans] ref|NP_506742.1| Seven TM Receptor family member (str-45) [Caenorhabditis elegans] 0.0
blast CAB05810 Hypothetical protein T09F5.3 [Caenorhabditis elegans] ref|NP_506742.1| Seven TM Receptor family member (str-45) [Caenorhabditis elegans] 1.0E-177
blast CAB05810 Hypothetical protein T09F5.3 [Caenorhabditis elegans] ref|NP_506742.1| Seven TM Receptor family member (str-45) [Caenorhabditis elegans] 1.0E-161
blast CAE66306 Hypothetical protein CBG11556 [Caenorhabditis briggsae] 1.0E-138
blast CAE66306 Hypothetical protein CBG11556 [Caenorhabditis briggsae] 1.0E-125
blast CAB01122 Hypothetical protein C06B3.9 [Caenorhabditis elegans] ref|NP_506453.1| Seven TM Receptor family member (str-252) [Caenorhabditis elegans] 1.0E-103
blast CAE61826 Hypothetical protein CBG05796 [Caenorhabditis briggsae] 2.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.3E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.3E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506742.1 7 15-37,44-66,90-112,133-155,197-219,243-265,280-302
T09F5.3 7 15-37,44-66,90-112,133-155,197-219,243-265,280-302
SNAP00000036439 7 15-37,44-66,90-112,133-155,197-219,243-265,280-302
GENEFINDER00000036447 12 13-33,72-94,115-137,179-201,225-247,262-284,313-335,362-384,404-426,446-465,490-512,522-544
Sequence
Target Sequence 
>C. ELEGANS:179615_AT
gaggacccctctattgttttggagttgttgatgagtattcggatgagtatttgaaaaaag
aaattttcgagaagtacaaagtagccatcaaggatctacctcgatttgccattgtaacct
atgactcagaaggctatttgcgatggaggaacatttcttatcttatcacttcaattttta
tgatgggatctcagtacctaataatcattttctgtggaatccgaatgcatttgagaatgg
gaaaagagctcaaacagttctccgtgacaaaccgaaatcttcagaagcaatttttcaagg
ctctcgtatttcaaactctcgctccaactcttctgtttgtggtaccagcagctccaattt
taatgggacctcttttcgatacagaaatgagtattagaactggtttaatatatgttctac
tgaacatttatccaccaattgatagtattgctttcatggtgattgtgtcggaatataaac
aagttattagaggttccatgatctcaaaaacatttttgccggccaatcagcaacttgaac
cacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGACCCCTCTATTGTTTTGGAGT 111 403 449 Antisense
CAAGGATCTACCTCGATTTGCCATT 296 183 537 Antisense
GAGGAACATTTCTTATCTTATCACT 703 403 594 Antisense
AAGAGCTCAAACAGTTCTCCGTGAC 332 153 692 Antisense
CAAGGCTCTCGTATTTCAAACTCTC 37 179 744 Antisense
CTCCAACTCTTCTGTTTGTGGTACC 13 235 770 Antisense
TTGTGGTACCAGCAGCTCCAATTTT 40 699 785 Antisense
TTAATGGGACCTCTTTTCGATACAG 685 679 808 Antisense
GTTCTACTGAACATTTATCCACCAA 342 443 862 Antisense
AAAACATTTTTGCCGGCCAATCAGC 301 131 955 Antisense
GCCAATCAGCAACTTGAACCACGCC 16 273 970 Antisense
Sequence Source Affymetrix Proprietary Database