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[179614_at]

Description ZK930.6 /REP_DB=WormBase Gene ID /WP=CE06676 /TR=Q23668 /GB=CAA94174.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 65.7
(-2.2)
A 		123.3
(3)
A 		56.6
(-3)
A 		77.6
(-1.1)
A 		67
B 60.2
(-3)
A 		102.9
(3)
A 		75.6
(-0.8)
A 		79.4
(-0.3)
A 		43
C 49.4
(-3)
A 		49.7
(-3)
A 		67.5
(-1)
A 		103.7
(3)
A 		54
avr 58.4
(-3) 		92
(3) 		66.6
(-1.5) 		86.9
(2.1) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 14.7
(-2.8)
A 		11.9
(-3)
A 		55.6
(-0)
A 		67.5
(0.8)
A 		18.6
(-2.5)
A 		100.1
(3)
M 		88
B 10.2
(-3)
A 		50.2
(0.5)
A 		46.6
(0.2)
A 		60.3
(1.4)
A 		77.7
(3)
A 		78.2
(3)
A 		68
C 87.2
(3)
A 		24.8
(-3)
A 		64.9
(0.9)
A 		72.8
(1.6)
A 		83.5
(2.6)
A 		85.3
(2.8)
A 		62
avr 37.4
(-2.1) 		29
(-3) 		55.7
(-0.3) 		66.9
(0.9) 		59.9
(0.1) 		87.9
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 23.9
(1.9)
A 		26.8
(3)
A 		14.8
(-1.7)
A 		11.4
(-3)
A 		15
B 19.2
(-1.4)
A 		25.4
(3)
A 		17.5
(-2.6)
A 		16.9
(-3)
A 		9
C 16.3
(-1.7)
A 		14.3
(-3)
A 		23.5
(3)
A 		17.5
(-0.9)
A 		9
avr 19.8
(0.9) 		22.2
(3) 		18.6
(-0.1) 		15.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.7
(-3)
A 		4.2
(-2.6)
A 		12.1
(-0.4)
A 		17.1
(1)
A 		5.6
(-2.2)
A 		24.4
(3)
M 		22
B 3.5
(-3)
A 		16.7
(-0.2)
A 		11.3
(-1.3)
A 		16
(-0.3)
A 		31.6
(3)
A 		29.2
(2.5)
A 		28
C 32.3
(3)
A 		7.6
(-3)
A 		16.5
(-0.8)
A 		14.6
(-1.3)
A 		27
(1.7)
A 		28.6
(2.1)
A 		25
avr 12.8
(-1.9) 		9.5
(-3) 		13.3
(-1.7) 		15.9
(-0.9) 		21.4
(1) 		27.4
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179614_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3861
Sequence Type Exemplar sequence
Representative Public ID ZK930.6 NCBI
Target Description ZK930.6 /REP_DB=WormBase Gene ID /WP=CE06676 /TR=Q23668 /GB=CAA94174.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064137 NCBI Caenorhabditis elegans ZK930.6 (ZK930.6) mRNA, complete cds. 11/11 None
ZK930.6 ENSEMBL cdna:known chromosome:CEL140:II:11885034:11886463:1 gene:ZK930.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000320 8/11 Cross Hyb Matching Probes None
GENEFINDER00000000328 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11885030-11886460(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK930.6
Entrez Gene 191466 Entrez gene
SwissProt Q23668 EMBL-EBI
WormBase CE06676 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94174 Hypothetical protein ZK930.6 [Caenorhabditis elegans] ref|NP_496538.1| ZK930.6 [Caenorhabditis elegans] 1.0E-135
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496538.1 1 226-248
ZK930.6 1 226-248
Sequence
Target Sequence 
>C. ELEGANS:179614_AT
tggaagcagttccgtactttgcgcgcacgtggtgcctcaacagggagagatcgggaagaa
agcaataacttatgaaatgagtgagtttttttttaagcttctagctctcaaaactattgt
ttcggaatgccgctggaaggaaagtgaagtcgattccttgatgattgttgggaaactcgg
caaacggatgaagaacacagtcaggctttcccaagcacttgtgaaactcacacttggacg
gactattccaaatataattagatcggtcaaggtagagttcgtctatgattccgctctcga
tggccccacagctggtctgtgtacagcggtggccatatggggcgccatcaaaggcacaca
aatgcctaccggtctggttattattggaaaaattaacttgttcgggaatgttgaggcagt
tgaagatctggtggagatggtccaggaatgcatcgagaaaggccatacggctgtgatggt
gccggggatttcctcgtttgctgagctatcgagtcatttttatgtgctcttttggtcatt
tttaatactgtcttcaatgaatgccctacttgatgtgattatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAGCAGTTCCGTACTTTGCGCG 75 547 171 Antisense
GAAGAACACAGTCAGGCTTTCCCAA 174 339 360 Antisense
GAAACTCACACTTGGACGGACTATT 283 357 393 Antisense
AGAGTTCGTCTATGATTCCGCTCTC 452 69 444 Antisense
GCCCCACAGCTGGTCTGTGTACAGC 136 287 473 Antisense
TACAGCGGTGGCCATATGGGGCGCC 709 633 492 Antisense
ATGGGGCGCCATCAAAGGCACACAA 368 49 507 Antisense
ACACAAATGCCTACCGGTCTGGTTA 328 111 526 Antisense
GGCTGTGATGGTGCCGGGGATTTCC 15 541 639 Antisense
GATTTCCTCGTTTGCTGAGCTATCG 546 427 657 Antisense
GAATGCCCTACTTGATGTGATTATC 600 329 729 Antisense
Sequence Source Affymetrix Proprietary Database