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[179612_at]

Description F09C3.4 /REP_DB=WormBase Gene ID /WP=CE09279 /TR=O17775 /GB=CAB07182.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 12
(-2.7)
A 		30.4
(-1)
A 		8.2
(-3)
A 		73.4
(3)
A 		65
B 10.7
(-2.5)
A 		76.2
(3)
A 		4.2
(-3)
A 		42.8
(0.2)
A 		72
C 16.5
(-1.7)
A 		14.5
(-2)
A 		7.1
(-3)
A 		50.1
(3)
A 		43
avr 13.1
(-2.2) 		40.4
(1.2) 		6.5
(-3) 		55.4
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 13.7
(-2.6)
A 		9.8
(-3)
A 		68.7
(3)
A 		12.6
(-2.7)
A 		51
(1.2)
A 		58.1
(1.9)
A 		59
B 34.7
(0.2)
A 		59.7
(3)
A 		19
(-1.5)
A 		7.8
(-2.8)
A 		5.6
(-3)
A 		12.9
(-2.2)
A 		54
C 43.1
(0.5)
A 		68.2
(3)
A 		27.1
(-1.2)
A 		31.6
(-0.7)
A 		20.3
(-1.9)
A 		9.1
(-3)
A 		59
avr 30.5
(-0.2) 		45.9
(3) 		38.3
(1.4) 		17.3
(-3) 		25.6
(-1.3) 		26.7
(-1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.4
(-1.5)
A 		6.6
(0.1)
A 		2.2
(-3)
A 		10.8
(3)
A 		9
B 3.4
(-2.2)
A 		18.8
(3)
A 		1
(-3)
A 		9.1
(-0.3)
A 		18
C 5.4
(-0.1)
A 		4.2
(-1.3)
A 		2.5
(-3)
A 		8.5
(3)
A 		6
avr 4.4
(-1.1) 		9.9
(3) 		1.9
(-3) 		9.5
(2.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.5
(-3)
A 		3.5
(-2.5)
A 		15
(2.8)
A 		3.2
(-2.7)
A 		15.4
(3)
A 		14.2
(2.4)
A 		13
B 12.1
(0.4)
A 		19.9
(3)
A 		4.6
(-2.2)
A 		2.1
(-3)
A 		2.3
(-2.9)
A 		4.8
(-2.1)
A 		18
C 16
(1.4)
A 		20.8
(3)
A 		6.9
(-1.7)
A 		6.4
(-1.9)
A 		6.6
(-1.8)
A 		3
(-3)
A 		18
avr 10.2
(0.5) 		14.7
(3) 		8.8
(-0.3) 		3.9
(-3) 		8.1
(-0.7) 		7.3
(-1.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179612_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1952
Sequence Type Exemplar sequence
Representative Public ID F09C3.4 NCBI
Target Description F09C3.4 /REP_DB=WormBase Gene ID /WP=CE09279 /TR=O17775 /GB=CAB07182.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061095 NCBI Caenorhabditis elegans F09C3.4 (F09C3.4) mRNA, complete cds. 11/11 None
SNAP00000039659 ENSEMBL cdna:SNAP chromosome:CEL140:I:14295990:14297998:-1 11/11 None
GENEFINDER00000039669 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14295990:14297998:-1 11/11 None
F09C3.4 ENSEMBL cdna:known chromosome:CEL140:I:14295990:14297998:-1 gene:F09C3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14295920-14297929(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09C3.4
Entrez Gene 184228 Entrez gene
SwissProt O17775 EMBL-EBI
WormBase CE09279 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07182 Hypothetical protein F09C3.4 [Caenorhabditis elegans] ref|NP_493496.1| F09C3.4 [Caenorhabditis elegans] 1.0E-179
blast CAB07182 Hypothetical protein F09C3.4 [Caenorhabditis elegans] ref|NP_493496.1| F09C3.4 [Caenorhabditis elegans] 1.0E-169
blast CAB03323 Hypothetical protein T06E6.13 [Caenorhabditis elegans] ref|NP_506837.1| T06E6.13 [Caenorhabditis elegans] 7.0E-69
blast CAB03323 Hypothetical protein T06E6.13 [Caenorhabditis elegans] ref|NP_506837.1| T06E6.13 [Caenorhabditis elegans] 8.0E-69
blast CAB04556 Hypothetical protein K03D7.7 [Caenorhabditis elegans] ref|NP_507432.1| K03D7.7 [Caenorhabditis elegans] 2.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-37
Sequence
Target Sequence 
>C. ELEGANS:179612_AT
gttccaggacctttcaattttgctcaagagcccgcgaattcggctgtcctggttagacct
tgctccaataagttgtacgtcttataattggacgggggtagatgtgaactcaattgtcaa
aatattggagccaataaagtctcggcacattgaaagagtctactttcaagatatcaatta
tgcggaagtggtcctaattttacaaaaattcaaagcagggtttcttagagaaatatcttt
ggatagcgaacaaatcaatggttggagtattccacaaattggaggtatggtgcatttgga
gcagtggaaaagagcacagcatctcaagattcactcatttgtaaatctcgatccgctcat
caaccacatttctcattttcacacgatccaacttttatgtcagtcgatgagcaagcttca
aatgttgaaatggaaagaaatcattaacacatctaaaactctcgtgaaatgtgtacttcg
aggaaatgcgaactttgctggtttagcaagagtttttgatcccgcctttgagcaagctta
tggtaacattagttacgtctccgctgatgaattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCAGGACCTTTCAATTTTGCTC 251 441 366 Antisense
TTGCTCAAGAGCCCGCGAATTCGGC 160 691 385 Antisense
AATTCGGCTGTCCTGGTTAGACCTT 446 171 402 Antisense
GACCTTGCTCCAATAAGTTGTACGT 540 381 421 Antisense
GGAGCCAATAAAGTCTCGGCACATT 368 521 492 Antisense
GAGCACAGCATCTCAAGATTCACTC 26 391 677 Antisense
TTGTAAATCTCGATCCGCTCATCAA 195 707 704 Antisense
TTCTCATTTTCACACGATCCAACTT 40 689 735 Antisense
TAGCAAGAGTTTTTGATCCCGCCTT 110 651 869 Antisense
ATCCCGCCTTTGAGCAAGCTTATGG 473 37 884 Antisense
GTTACGTCTCCGCTGATGAATTCAA 584 445 917 Antisense
Sequence Source Affymetrix Proprietary Database