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[179611_at]

Description F57A8.3 /REP_DB=WormBase Gene ID /WP=CE16146 /TR=Q20914 /GB=CAA94835.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 61      6grp_total > 33      4grp_total > 11      6grp_cgc > 71      6grp_high1_sub > 04      6grp_cgc_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 44.6
(-1.8)
A 		49.1
(-1.6)
A 		22.8
(-3)
A 		135.4
(3)
P 		113
B 85.3
(1.3)
M 		63.6
(-3)
A 		68.5
(-2)
A 		93.8
(3)
P 		30
C 24.7
(-3)
A 		46.7
(-1.9)
A 		41.8
(-2.1)
A 		144.6
(3)
P 		120
avr 51.5
(-2.5) 		53.1
(-2.3) 		44.4
(-3) 		124.6
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 67.7
(3)
A 		32.4
(-1.7)
A 		60
(2)
P 		35.4
(-1.3)
A 		29.9
(-2)
A 		22.6
(-3)
A 		45
B 41.9
(0.9)
A 		36.5
(0.3)
P 		59.6
(3)
A 		8.2
(-3)
A 		25.7
(-1)
A 		26.4
(-0.9)
P 		51
C 35.4
(-2.2)
P 		66.1
(3)
P 		33.9
(-2.4)
A 		63.9
(2.6)
P 		36.5
(-2)
P 		30.5
(-3)
A 		36
avr 48.3
(2.3) 		45
(1.5) 		51.2
(3) 		35.8
(-0.7) 		30.7
(-2) 		26.5
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 16.2
(1.4)
A 		10.7
(-1)
A 		6
(-3)
A 		19.8
(3)
P 		14
B 27.2
(3)
M 		15.7
(-3)
A 		15.9
(-2.9)
A 		20
(-0.8)
P 		12
C 8.2
(-3)
A 		13.4
(-1.1)
A 		14.6
(-0.6)
A 		24.4
(3)
P 		16
avr 17.2
(0.3) 		13.3
(-2.3) 		12.2
(-3) 		21.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 12.5
(2.5)
A 		11.5
(1.7)
A 		13.1
(3)
P 		9
(-0.2)
A 		9
(-0.2)
A 		5.5
(-3)
A 		8
B 14.6
(3)
A 		12.1
(1.8)
P 		14.5
(3)
A 		2.2
(-3)
A 		10.5
(1)
A 		9.8
(0.7)
P 		12
C 13.1
(-0.7)
P 		20.2
(3)
P 		8.6
(-3)
A 		12.8
(-0.8)
P 		11.8
(-1.3)
P 		10.2
(-2.2)
A 		12
avr 13.4
(1.9) 		14.6
(3) 		12.1
(0.7) 		8
(-3) 		10.4
(-0.8) 		8.5
(-2.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179611_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12475
Sequence Type Exemplar sequence
Representative Public ID F57A8.3 NCBI
Target Description F57A8.3 /REP_DB=WormBase Gene ID /WP=CE16146 /TR=Q20914 /GB=CAA94835.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073180(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073180 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-118) (str-118) mRNA, complete cds. 11/11 None
GENEFINDER00000034042 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10054737:10056245:1 9/11 None
F57A8.3 ENSEMBL cdna:known chromosome:CEL140:V:10054737:10056393:1 gene:F57A8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10054736-10056393(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-118
Ensembl F57A8.3
Entrez Gene 186429 Entrez gene
SwissProt Q20914 EMBL-EBI
WormBase CE16146 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94835 Hypothetical protein F57A8.3 [Caenorhabditis elegans] ref|NP_505581.1| Seven TM Receptor family member (str-118) [Caenorhabditis elegans] 0.0
blast CAA94835 Hypothetical protein F57A8.3 [Caenorhabditis elegans] ref|NP_505581.1| Seven TM Receptor family member (str-118) [Caenorhabditis elegans] 1.0E-170
blast CAE61043 Hypothetical protein CBG04788 [Caenorhabditis briggsae] 1.0E-146
blast CAE61043 Hypothetical protein CBG04788 [Caenorhabditis briggsae] 1.0E-134
blast CAE61073 Hypothetical protein CBG04823 [Caenorhabditis briggsae] 1.0E-109
blast CAE61073 Hypothetical protein CBG04823 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.5E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505581.1 7 10-32,45-64,94-116,136-158,210-232,260-282,292-314
F57A8.3 7 10-32,45-64,94-116,136-158,210-232,260-282,292-314
GENEFINDER00000034042 7 10-32,45-64,94-116,136-158,210-232,257-279,284-306
Sequence
Target Sequence 
>C. ELEGANS:179611_AT
gtattatatattcagtccaacatcagaaaaaactgaatatataaatatgtcgacaatgca
aattgagaatttcaacattagcggaaacccatatgttggggttatatgctattacatttt
gacaactccactacataattatggtgatgttgattggtggactatgggtgcgctcctagg
acttatcatatttcagatattattttacggaatatcattgatttgtggtattttgaccta
tagaagcaatatgaagcttctaagattggctcaattatccaaaaaaatctacaaaactca
gatgcagttgctcagagctattgtgattcaagccgtcgtgcccttagtctcagtatatgt
accgacagctattatgattggagggggtatggtaggaatctatatgggtgaaattggtca
ttttgtggtgatgagcatttcaatatacccaccacttgattcagtcgtgtttttgttatc
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTATATATTCAGTCCAACATCA 358 451 474 Antisense
ACATTTTGACAACTCCACTACATAA 237 101 587 Antisense
ATTGGTGGACTATGGGTGCGCTCCT 668 3 626 Antisense
GCGCTCCTAGGACTTATCATATTTC 610 287 643 Antisense
ACTCAGATGCAGTTGCTCAGAGCTA 249 93 769 Antisense
CTATTGTGATTCAAGCCGTCGTGCC 15 223 791 Antisense
TCGTGCCCTTAGTCTCAGTATATGT 579 605 809 Antisense
GTACCGACAGCTATTATGATTGGAG 2 459 832 Antisense
ATGAGCATTTCAATATACCCACCAC 238 45 904 Antisense
ATACCCACCACTTGATTCAGTCGTG 269 23 918 Antisense
GATTCAGTCGTGTTTTTGTTATCAA 462 431 931 Antisense
Sequence Source Affymetrix Proprietary Database