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[179610_s_at]

Description T16G1.5 /REP_DB=WormBase Gene ID /WP=CE20075 /TR=Q9XUP8 /GB=CAB04727.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 63      6grp_highest_nonorm > 90      6grp_total > 63      4grp_total > 07      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 123.9
(3)
P 		14.8
(-3)
A 		105
(2)
A 		100.8
(1.7)
A 		109
B 135.3
(2.9)
P 		103.8
(-0.3)
A 		76.8
(-3)
P 		136.5
(3)
P 		60
C 105
(1.3)
P 		11.6
(-3)
A 		102.2
(1.1)
P 		143.1
(3)
P 		132
avr 121.4
(2.6) 		43.4
(-3) 		94.7
(0.7) 		126.8
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 117.3
(-1.2)
P 		107.9
(-1.8)
P 		180.9
(3)
P 		111.5
(-1.6)
P 		89.6
(-3)
P 		106.4
(-1.9)
P 		91
B 93.3
(-2.8)
P 		90.7
(-3)
P 		171.8
(3)
P 		156.2
(1.8)
P 		105.5
(-1.9)
P 		161.6
(2.2)
P 		81
C 82.2
(-3)
P 		92.6
(-1.8)
P 		135.3
(3)
P 		131.9
(2.6)
P 		111
(0.3)
P 		100.7
(-0.9)
P 		53
avr 97.6
(-3) 		97.1
(-3) 		162.7
(3) 		133.2
(0.3) 		102
(-2.6) 		122.9
(-0.6) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 45.1
(3)
P 		3.2
(-3)
A 		27.5
(0.5)
A 		14.7
(-1.4)
A 		42
B 43.1
(3)
P 		25.6
(-1.2)
A 		17.8
(-3)
P 		29.1
(-0.3)
P 		25
C 34.8
(2.9)
P 		3.3
(-3)
A 		35.6
(3)
P 		24.1
(0.9)
P 		32
avr 41
(3) 		10.7
(-3) 		27
(0.2) 		22.6
(-0.6) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 21.6
(-3)
P 		38.4
(2.7)
P 		39.4
(3)
P 		28.3
(-0.7)
P 		27
(-1.2)
P 		25.9
(-1.6)
P 		18
B 32.5
(-2.5)
P 		30.2
(-3)
P 		41.7
(-0.7)
P 		41.4
(-0.8)
P 		42.9
(-0.5)
P 		60.2
(3)
P 		30
C 30.5
(-0.4)
P 		28.3
(-1.9)
P 		34.4
(2)
P 		26.5
(-3)
P 		35.9
(3)
P 		33.7
(1.6)
P 		9
avr 28.2
(-3) 		32.3
(-0.9) 		38.5
(2.3) 		32.1
(-1) 		35.3
(0.6) 		39.9
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179610_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12546
Sequence Type Exemplar sequence
Representative Public ID T16G1.5 NCBI
Target Description T16G1.5 /REP_DB=WormBase Gene ID /WP=CE20075 /TR=Q9XUP8 /GB=CAB04727.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073834 NCBI Caenorhabditis elegans T16G1.5 (T16G1.5) mRNA, complete cds. 11/11 None
SNAP00000020368 ENSEMBL cdna:SNAP chromosome:CEL140:V:12940247:12941886:-1 11/11 None
GENEFINDER00000020379 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12940247:12941886:-1 11/11 None
T16G1.5 ENSEMBL cdna:known chromosome:CEL140:V:12940244:12942096:-1 gene:T16G1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12940246-12941886(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16G1.5
Entrez Gene 179775 Entrez gene
SwissProt Q9XUP8 EMBL-EBI
WormBase CE20075 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04727 Hypothetical protein T16G1.5 [Caenorhabditis elegans] ref|NP_506235.1| T16G1.5 [Caenorhabditis elegans] 0.0
blast CAB63314 Hypothetical protein T16G1.7 [Caenorhabditis elegans] ref|NP_506233.1| T16G1.7 [Caenorhabditis elegans] 0.0
blast CAE64714 Hypothetical protein CBG09500 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 9.5E-6
Sequence
Target Sequence 
>C. ELEGANS:179610_S_AT
aagcaaatgtacactcgagcacgtcaaattaatccggaacgtctgacaaaacctacagat
gcagtcgaagcattaggaatggatatcgtcaactttgagatttcatgtcatgtgaacaag
tacgctggcattcaaaaaaatgttctggttcatggagatttatgggcagccaatattttg
tggaaagagaatgatggaaactgtgtagccagcaaagttattgattatcagctcatccac
atgggaaatccagcagaagatcttgttcgtgtgtttctttccacgctctctggtgctgac
agacaggctcactgggagaaacttttagaacaattctacgagtatttcttggaggcgctt
gaaggtaatgaggctccttacacactcgatcagttaaaagagtcatatcggttatatttt
gttggtggtggtctttttgtgatgccactgtttggccctgttgctcaggctaaactttcg
tattcgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCAAATGTACACTCGAGCACGTC 311 151 691 Antisense
CGAGCACGTCAAATTAATCCGGAAC 571 249 706 Antisense
TTATTGATTATCAGCTCATCCACAT 184 679 908 Antisense
AGATCTTGTTCGTGTGTTTCTTTCC 145 67 948 Antisense
CTGGTGCTGACAGACAGGCTCACTG 602 239 980 Antisense
GAGTATTTCTTGGAGGCGCTTGAAG 371 399 1030 Antisense
TAATGAGGCTCCTTACACACTCGAT 328 637 1056 Antisense
GTTGGTGGTGGTCTTTTTGTGATGC 59 437 1111 Antisense
TTTGTGATGCCACTGTTTGGCCCTG 185 667 1126 Antisense
TTTGGCCCTGTTGCTCAGGCTAAAC 53 667 1141 Antisense
TCAGGCTAAACTTTCGTATTCGACT 140 603 1155 Antisense
Sequence Source Affymetrix Proprietary Database