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[179609_at]

Description ZK287.3 /REP_DB=WormBase Gene ID /WP=CE06612 /TR=Q23455 /GB=CAA94799.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 60      6grp_total > 19      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 638
1 2 3 4 range
A 685.6
(3)
P 		300.6
(-1.7)
P 		198.1
(-3)
P 		541.1
(1.2)
P 		488
B 836.2
(3)
P 		248.7
(-2.6)
P 		208.4
(-3)
P 		465.8
(-0.5)
P 		628
C 770.4
(3)
P 		238.2
(-2.9)
P 		227.3
(-3)
P 		495.4
(-0)
P 		543
avr 764.1
(3) 		262.5
(-2.4) 		211.3
(-3) 		500.8
(0.1) 		553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 599.9
(3)
P 		372.6
(-2.6)
P 		385.2
(-2.3)
P 		384.3
(-2.3)
P 		539.6
(1.5)
P 		356.3
(-3)
P 		244
B 659.3
(3)
P 		406.6
(-2.1)
P 		359.4
(-3)
P 		474.2
(-0.7)
P 		580.5
(1.4)
P 		371
(-2.8)
P 		300
C 592.2
(3)
P 		441
(0.2)
P 		320.4
(-2)
P 		426.9
(-0)
P 		512.8
(1.5)
P 		266.7
(-3)
P 		326
avr 617.1
(3) 		406.7
(-1.4) 		355
(-2.5) 		428.5
(-1) 		544.3
(1.5) 		331.3
(-3) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 249.6
(3)
P 		65.2
(-2.6)
P 		51.8
(-3)
P 		79.2
(-2.2)
P 		198
B 266.7
(3)
P 		61.4
(-2.6)
P 		48.3
(-3)
P 		99.3
(-1.6)
P 		218
C 255
(3)
P 		68.5
(-3)
P 		79.2
(-2.7)
P 		83.5
(-2.5)
P 		187
avr 257.1
(3) 		65
(-2.8) 		59.8
(-3) 		87.3
(-2.2) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 110.6
(-1)
P 		132.5
(0.7)
P 		83.9
(-3)
P 		97.5
(-2)
P 		162.8
(3)
P 		86.7
(-2.8)
P 		79
B 229.4
(2.7)
P 		135.4
(-1.1)
P 		87.3
(-3)
P 		125.6
(-1.5)
P 		235.8
(3)
P 		138.3
(-0.9)
P 		149
C 219.5
(3)
P 		134.6
(-0.7)
P 		81.6
(-3)
P 		85.9
(-2.8)
P 		165.9
(0.7)
P 		89.3
(-2.7)
P 		138
avr 186.5
(2.9) 		134.2
(-0.1) 		84.3
(-3) 		103
(-1.9) 		188.2
(3) 		104.8
(-1.8) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11593
Sequence Type Exemplar sequence
Representative Public ID ZK287.3 NCBI
Target Description ZK287.3 /REP_DB=WormBase Gene ID /WP=CE06612 /TR=Q23455 /GB=CAA94799.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073093 NCBI Caenorhabditis elegans ZK287.3 (ZK287.3) mRNA, complete cds. 11/11 None
SNAP00000034522 ENSEMBL cdna:SNAP chromosome:CEL140:V:9680870:9681584:1 11/11 None
GENEFINDER00000034535 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9680870:9681584:1 11/11 None
ZK287.3 ENSEMBL cdna:known chromosome:CEL140:V:9680870:9681584:1 gene:ZK287.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9680869-9681584(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK287.3
Entrez Gene 191281 Entrez gene
SwissProt Q23455 EMBL-EBI
WormBase CE06612 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94799 Hypothetical protein ZK287.3 [Caenorhabditis elegans] ref|NP_505494.1| ZK287.3 [Caenorhabditis elegans] 3.0E-52
blast CAE72226 Hypothetical protein CBG19338 [Caenorhabditis briggsae] 3.0E-37
Sequence
Target Sequence 
>C. ELEGANS:179609_AT
gctcatcgccgagtctcgtgtattctataaccgattcgacggcgggctctcctcagatcg
tttcatggagcagaaaagggatggtgctgaagcctcgtacgactatgacgccaaccaagt
aattcgaaacacaatgaagcgcaaccgtcaatgccttctcaacgctggtctctctcaagg
atgcgatttttctgatctccttcatgctcagactcaagctcgcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCATCGCCGAGTCTCGTGTATTC 423 301 66 Antisense
GCCGAGTCTCGTGTATTCTATAACC 21 285 73 Antisense
TATAACCGATTCGACGGCGGGCTCT 140 655 91 Antisense
GCTCTCCTCAGATCGTTTCATGGAG 27 301 111 Antisense
AAGGGATGGTGCTGAAGCCTCGTAC 166 159 141 Antisense
TGAAGCCTCGTACGACTATGACGCC 465 567 153 Antisense
GACGCCAACCAAGTAATTCGAAACA 474 379 172 Antisense
TGAAGCGCAACCGTCAATGCCTTCT 241 575 200 Antisense
AACGCTGGTCTCTCTCAAGGATGCG 519 145 226 Antisense
TTTTCTGATCTCCTTCATGCTCAGA 181 677 253 Antisense
TCATGCTCAGACTCAAGCTCGCAAG 239 623 267 Antisense
Sequence Source Affymetrix Proprietary Database