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[179608_at]

Description ZK909.5 /REP_DB=WormBase Gene ID /WP=CE15481 /TR=O18309 /GB=CAB05033.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.4
(-2.4)
A 		2.2
(-3)
A 		2.3
(-2.7)
A 		4.3
(3)
A 		2
B 2
(-3)
A 		2.2
(-2.9)
A 		3.4
(-2.5)
A 		19.6
(3)
A 		18
C 2.3
(0.8)
A 		2
(-0.2)
A 		1.1
(-3)
A 		3
(3)
A 		2
avr 2.2
(-2.9) 		2.1
(-3) 		2.3
(-2.8) 		9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.5
(3)
A 		1.7
(-3)
A 		2.4
(-1.5)
A 		2.8
(-0.6)
A 		2.4
(-1.5)
A 		4.3
(2.6)
A 		3
B 1.8
(-2.4)
A 		2.1
(-1.9)
A 		5.2
(3)
A 		2
(-2.1)
A 		1.4
(-3)
A 		2.5
(-1.3)
A 		4
C 2.8
(-0.2)
A 		1.8
(-1.9)
A 		2
(-1.6)
A 		2.3
(-1.1)
A 		4.6
(3)
A 		1.2
(-3)
A 		3
avr 3
(2.1) 		1.9
(-3) 		3.2
(3) 		2.4
(-0.7) 		2.8
(1.2) 		2.7
(0.7) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.9
(3)
A 		0.5
(-3)
A 		0.6
(-1.5)
A 		0.6
(-1.5)
A 		0
B 0.6
(-2.8)
A 		0.5
(-3)
A 		0.8
(-2.5)
A 		4.2
(3)
A 		4
C 0.8
(3)
A 		0.6
(-0)
A 		0.4
(-3)
A 		0.5
(-1.5)
A 		0
avr 0.8
(-1.6) 		0.5
(-3) 		0.6
(-2.5) 		1.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.8
(0.6)
A 		0.6
(-1.8)
A 		0.5
(-3)
A 		0.7
(-0.6)
A 		0.7
(-0.6)
A 		1
(3)
A 		1
B 0.6
(-2.3)
A 		0.7
(-1.5)
A 		1.3
(3)
A 		0.5
(-3)
A 		0.6
(-2.3)
A 		0.9
(0)
A 		1
C 1.1
(0.8)
A 		0.6
(-1.9)
A 		0.5
(-2.5)
A 		0.5
(-2.5)
A 		1.5
(3)
A 		0.4
(-3)
A 		1
avr 0.8
(1) 		0.6
(-3) 		0.8
(1) 		0.6
(-3) 		0.9
(3) 		0.8
(1) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179608_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.797
Sequence Type Exemplar sequence
Representative Public ID ZK909.5 NCBI
Target Description ZK909.5 /REP_DB=WormBase Gene ID /WP=CE15481 /TR=O18309 /GB=CAB05033.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061208 NCBI Caenorhabditis elegans ZK909.5 (ZK909.5) mRNA, complete cds. 11/11 None
SNAP00000000351 ENSEMBL cdna:SNAP chromosome:CEL140:I:14963811:14964494:-1 11/11 None
GENEFINDER00000000358 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14963811:14965188:-1 11/11 None
ZK909.5 ENSEMBL cdna:known chromosome:CEL140:I:14963811:14964797:-1 gene:ZK909.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14963741-14964728(-) 99.29 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK909.5
Entrez Gene 191462 Entrez gene
SwissProt O18309 EMBL-EBI
WormBase CE15481 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05033 Hypothetical protein ZK909.5 [Caenorhabditis elegans] ref|NP_493609.1| ZK909.5 [Caenorhabditis elegans] 0.0
blast CAB05033 Hypothetical protein ZK909.5 [Caenorhabditis elegans] ref|NP_493609.1| ZK909.5 [Caenorhabditis elegans] 1.0E-175
blast CAB05033 Hypothetical protein ZK909.5 [Caenorhabditis elegans] ref|NP_493609.1| ZK909.5 [Caenorhabditis elegans] 1.0E-128
blast AAF39903 Hypothetical protein H24O09.2 [Caenorhabditis elegans] ref|NP_503305.1| H24O09.2 [Caenorhabditis elegans] 1.0E-14
blast CAB04423 Hypothetical protein F49B2.1 [Caenorhabditis elegans] ref|NP_493499.1| F49B2.1 [Caenorhabditis elegans] 1.0E-14
blast AAF39903 Hypothetical protein H24O09.2 [Caenorhabditis elegans] ref|NP_503305.1| H24O09.2 [Caenorhabditis elegans] 3.0E-14
blast AAB92037 Hypothetical protein E04A4.2 [Caenorhabditis elegans] ref|NP_500624.1| E04A4.2 [Caenorhabditis elegans] 1.0E-13
blast CAB04423 Hypothetical protein F49B2.1 [Caenorhabditis elegans] ref|NP_493499.1| F49B2.1 [Caenorhabditis elegans] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:179608_AT
atgctctgcattacccgaaagttgatgatttcaaaattgaatgtgatgagttcgatctca
aatcgatttgtgatgattttgaaggaatgcagataaagagaatgaagattgagggaagac
ttgatataacgtattaccaagaattcatgaaggtattctgtcagcaagtcgacgaacttg
tacttttcggggatccatttaccagttctcactacaaaatagaagatgtgttgattcaaa
acagcaaaataactcttcaaatgacatcgttttcaaaaaactttgacactttgctgataa
acaatgcaagaagaatcttggtgtttgcacagacaagcctagcaactattgatattttcc
taaagcattgggtgcacggatcaaatccaagaatggagtattttgcgatagaattgatgg
aaagtgatctgaatgaagaagaatgctatgcactgatattgaaaggattggcctgtaaat
atgcaccaattgatcagataaaacaatttgatgatacattggaaggaggaatgaacatca
ctggagtgaatgacaccgtggctttaattcatcttgatacgttagcctcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCTGCATTACCCGAAAGTTGA 333 39 377 Antisense
GGTATTCTGTCAGCAAGTCGACGAA 658 505 528 Antisense
GAACTTGTACTTTTCGGGGATCCAT 449 349 550 Antisense
ATCCATTTACCAGTTCTCACTACAA 688 39 569 Antisense
AACTCTTCAAATGACATCGTTTTCA 628 139 627 Antisense
AAACTTTGACACTTTGCTGATAAAC 140 127 654 Antisense
TGGTGTTTGCACAGACAAGCCTAGC 195 553 695 Antisense
AGCATTGGGTGCACGGATCAAATCC 231 79 740 Antisense
AAGGATTGGCCTGTAAATATGCACC 65 159 839 Antisense
GGAGTGAATGACACCGTGGCTTTAA 493 513 919 Antisense
ATTCATCTTGATACGTTAGCCTCTA 633 11 943 Antisense
Sequence Source Affymetrix Proprietary Database