[Home] | [Total List]

[179607_at]

Description C18E9.9 /REP_DB=WormBase Gene ID /WP=CE05301 /TR=Q18089 /GB=CAA93849.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 22      6grp_total > 13      4grp_total > 60      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 916
1 2 3 4 range
A 1692.2
(2.5)
P 		1564.9
(1.6)
P 		1763.4
(3)
P 		914.2
(-3)
P 		849
B 1615.3
(2.6)
P 		1669.5
(3)
P 		1494.8
(1.7)
P 		847.5
(-3)
P 		822
C 1551.5
(1.5)
P 		1749.7
(3)
P 		1739.4
(2.9)
P 		942.2
(-3)
P 		808
avr 1619.7
(2.6) 		1661.4
(3) 		1665.9
(3) 		901.3
(-3) 		765

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1403
1 2 3 4 5 6 range
A 2424.5
(3)
P 		1751
(-0)
P 		2136.5
(1.7)
P 		2177
(1.9)
P 		1677.3
(-0.3)
P 		1079.7
(-3)
P 		1345
B 2266.1
(3)
P 		1942.8
(1.3)
P 		1729.2
(0.1)
P 		2093.3
(2.1)
P 		1586.3
(-0.6)
P 		1142.7
(-3)
P 		1123
C 1849.6
(2.1)
P 		1803.4
(1.8)
P 		1999.4
(3)
P 		1989.4
(2.9)
P 		1452.7
(-0.4)
P 		1021.1
(-3)
P 		978
avr 2180.1
(3) 		1832.4
(1.1) 		1955
(1.8) 		2086.6
(2.5) 		1572.1
(-0.3) 		1081.2
(-3) 		1099
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 482
1 2 3 4 range
A 616.1
(3)
P 		339.7
(-0.4)
P 		461
(1.1)
P 		133.8
(-3)
P 		482
B 515.1
(3)
P 		412.3
(1.2)
P 		346.4
(-0)
P 		180.6
(-3)
P 		335
C 513.6
(1.8)
P 		503.1
(1.6)
P 		606.2
(3)
P 		158.9
(-3)
P 		447
avr 548.3
(3) 		418.4
(1) 		471.2
(1.8) 		157.8
(-3) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 446.9
(0.1)
P 		622.7
(3)
P 		465.3
(0.4)
P 		552.1
(1.8)
P 		506.1
(1.1)
P 		262.9
(-3)
P 		360
B 788.5
(3)
P 		646.7
(0.7)
P 		419.9
(-3)
P 		554.4
(-0.8)
P 		644.5
(0.7)
P 		426.1
(-2.9)
P 		369
C 685.6
(3)
P 		550.3
(0.6)
P 		508.9
(-0.1)
P 		400.1
(-2)
P 		470.1
(-0.8)
P 		341.8
(-3)
P 		344
avr 640.3
(3) 		606.6
(2.3) 		464.7
(-0.6) 		502.2
(0.2) 		540.2
(1) 		343.6
(-3) 		297
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179607_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3803
Sequence Type Exemplar sequence
Representative Public ID C18E9.9 NCBI
Target Description C18E9.9 /REP_DB=WormBase Gene ID /WP=CE05301 /TR=Q18089 /GB=CAA93849.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063514 NCBI Caenorhabditis elegans C18E9.9 (C18E9.9) mRNA, complete cds. 11/11 None
SNAP00000035648 ENSEMBL cdna:SNAP chromosome:CEL140:II:8988416:8989447:-1 11/11 None
GENEFINDER00000035656 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8988416:8989447:-1 11/11 None
C18E9.9 ENSEMBL cdna:known chromosome:CEL140:II:8988266:8989453:-1 gene:C18E9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8988412-8989444(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18E9.9
Entrez Gene 182792 Entrez gene
SwissProt Q18089 EMBL-EBI
WormBase CE05301 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93849 Hypothetical protein C18E9.9 [Caenorhabditis elegans] ref|NP_495915.1| C18E9.9 [Caenorhabditis elegans] 2.0E-70
blast CAE59776 Hypothetical protein CBG03228 [Caenorhabditis briggsae] 8.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495915.1 4 12-31,36-58,70-92,102-124
C18E9.9 4 12-31,36-58,70-92,102-124
SNAP00000035648 4 12-31,36-58,70-92,102-124
GENEFINDER00000035656 4 12-31,36-58,70-92,102-124
Sequence
Target Sequence 
>C. ELEGANS:179607_AT
gtgctgaaaccagcactcctgcttctcacacttcttcaaattatctttatggcttcacca
ggagtccgtggatggttttggttcatttgcctcacatcgattctggaatttctcgcggct
atcgcagttgttgcagttgttttcttagatttaacttttacaagatcgggacagtttgtg
attattgaactcgcatacagtggagcattctgtgtatgcagtgctctcaacactatttac
tatttttgcaatatcttctatcatttcaatttttggttccttttggcaactattgtatcg
gtacttcttgtactagcatatggtcttcaagcactcatggcttggacttcaatgtctgct
tcaagaacttcttcttcacacacttcaaaccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTGAAACCAGCACTCCTGCTTC 589 477 46 Antisense
TTTATGGCTTCACCAGGAGTCCGTG 302 673 91 Antisense
GGAGTCCGTGGATGGTTTTGGTTCA 405 513 106 Antisense
TTCATTTGCCTCACATCGATTCTGG 534 689 127 Antisense
TCGATTCTGGAATTTCTCGCGGCTA 439 603 142 Antisense
CTCGCGGCTATCGCAGTTGTTGCAG 244 233 157 Antisense
TTCTGTGTATGCAGTGCTCTCAACA 90 695 253 Antisense
GGTTCCTTTTGGCAACTATTGTATC 190 503 320 Antisense
CATATGGTCTTCAAGCACTCATGGC 88 215 362 Antisense
GGCTTGGACTTCAATGTCTGCTTCA 581 537 384 Antisense
TCTTCTTCACACACTTCAAACCAAG 450 615 415 Antisense
Sequence Source Affymetrix Proprietary Database