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[179605_s_at]

Description B0491.6 /REP_DB=WormBase Gene ID /WP=CE02108 /TR=Q17513 /GB=CAA90088.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 31      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 62      6grp_total > 53      4grp_total > 62      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 305.5
(3)
P 		211.4
(-1)
P 		202.5
(-1.4)
P 		164.2
(-3)
P 		141
B 277.9
(-1.3)
P 		357.1
(3)
P 		270.2
(-1.7)
P 		245.6
(-3)
P 		112
C 445.7
(3)
P 		252
(-1.1)
P 		364.1
(1.3)
P 		162.7
(-3)
P 		283
avr 343
(3) 		273.5
(0.3) 		278.9
(0.5) 		190.8
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 431
1 2 3 4 5 6 range
A 296.9
(-3)
P 		406.2
(-0.9)
P 		607.5
(3)
P 		455.8
(0.1)
P 		383.8
(-1.3)
P 		365.2
(-1.7)
P 		311
B 496.9
(-0.9)
P 		473
(-1.3)
P 		728.3
(3)
P 		368.6
(-3)
P 		407.6
(-2.3)
P 		433.7
(-1.9)
P 		360
C 490.7
(0.5)
P 		561
(3)
P 		433.6
(-1.6)
P 		394.5
(-3)
P 		403.4
(-2.7)
P 		459.9
(-0.6)
P 		167
avr 428.2
(-2.1) 		480.1
(-0.4) 		589.8
(3) 		406.3
(-2.7) 		398.3
(-3) 		419.6
(-2.3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 111.2
(3)
P 		45.9
(-1.5)
P 		52.9
(-1)
P 		24
(-3)
P 		87
B 88.6
(3)
P 		88.2
(2.9)
P 		62.6
(-1.3)
P 		52.3
(-3)
P 		36
C 147.5
(3)
P 		72.5
(-0.7)
P 		126.9
(2)
P 		27.4
(-3)
P 		120
avr 115.8
(3) 		68.9
(-0.5) 		80.8
(0.4) 		34.6
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 54.7
(-3)
P 		144.5
(3)
P 		132.3
(2.2)
P 		115.6
(1.1)
P 		115.8
(1.1)
P 		88.9
(-0.7)
P 		90
B 172.9
(2.7)
P 		157.4
(1.5)
P 		176.9
(3)
P 		97.6
(-3)
P 		165.6
(2.1)
P 		161.7
(1.8)
P 		79
C 181.9
(3)
P 		171.2
(2.4)
P 		110.4
(-1.2)
P 		79.3
(-3)
P 		130.5
(-0)
P 		154
(1.4)
P 		103
avr 136.5
(0.9) 		157.7
(3) 		139.9
(1.2) 		97.5
(-3) 		137.3
(1) 		134.9
(0.7) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179605_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3842
Sequence Type Exemplar sequence
Representative Public ID B0491.6 NCBI
Target Description B0491.6 /REP_DB=WormBase Gene ID /WP=CE02108 /TR=Q17513 /GB=CAA90088.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064024 NCBI Caenorhabditis elegans B0491.6 (B0491.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000040226 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11345960:11347701:-1 11/11 None
B0491.6.2 ENSEMBL cdna:known chromosome:CEL140:II:11345865:11347830:-1 gene:B0491.6 11/11 A 
B0491.6.1 ENSEMBL cdna:known chromosome:CEL140:II:11345865:11347863:-1 gene:B0491.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040221 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11345956-11347698(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0491.6
Entrez Gene 174735 Entrez gene
SwissProt Q17513 EMBL-EBI
WormBase CE02108 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90088 Hypothetical protein B0491.6 [Caenorhabditis elegans] ref|NP_496425.1| B0491.6 [Caenorhabditis elegans] 0.0
blast CAE59525 Hypothetical protein CBG02920 [Caenorhabditis briggsae] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:179605_S_AT
gttcagtatagctatggacgatccagaaaaggaatggaatgttgatgagcttcaggaact
gcgtcgattctatacattatttcgagaaaaaaatcatttgccattcgttcaaactaagga
attcggaaaatttctgcgtaaagcatttggaagactagagcattatgagcttcaacgaga
aaatgacacttctcttcaagaaaaacgaaaattttggcaagaatacaggaaaacgcatgt
accaccgaaaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAGTATAGCTATGGACGATCCA 615 443 1056 Antisense
GATGAGCTTCAGGAACTGCGTCGAT 658 411 1099 Antisense
AACTGCGTCGATTCTATACATTATT 501 141 1112 Antisense
AAAAAAATCATTTGCCATTCGTTCA 695 129 1142 Antisense
ATTTGCCATTCGTTCAAACTAAGGA 609 1 1151 Antisense
GGAAAATTTCTGCGTAAAGCATTTG 318 513 1180 Antisense
AAAGCATTTGGAAGACTAGAGCATT 33 123 1195 Antisense
GACTAGAGCATTATGAGCTTCAACG 423 373 1208 Antisense
ATGACACTTCTCTTCAAGAAAAACG 272 43 1238 Antisense
ACAGGAAAACGCATGTACCACCGAA 231 107 1280 Antisense
AAAACGCATGTACCACCGAAAAGAG 405 123 1285 Antisense
Sequence Source Affymetrix Proprietary Database