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[179604_at]

Description B0491.6 /REP_DB=WormBase Gene ID /WP=CE02108 /TR=Q17513 /GB=CAA90088.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_highest_nonorm > 81      6grp_total > 64      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 216.2
(-3)
P 		274.3
(3)
P 		223.9
(-2.2)
P 		250.5
(0.5)
P 		58
B 235.2
(3)
P 		215.6
(-2.7)
P 		222.3
(-0.8)
P 		214.6
(-3)
P 		21
C 254.1
(3)
P 		237.3
(1)
P 		202.7
(-3)
P 		242.9
(1.7)
P 		51
avr 235.2
(1.3) 		242.4
(3) 		216.3
(-3) 		236
(1.5) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 277.1
(-0.3)
P 		225.7
(-2.4)
P 		354.9
(3)
P 		211.5
(-3)
P 		303
(0.8)
P 		240.5
(-1.8)
P 		143
B 203.7
(-3)
P 		234.9
(-1.7)
P 		303
(1.2)
P 		344.3
(3)
P 		252.4
(-0.9)
P 		271.9
(-0.1)
P 		141
C 243.9
(-3)
P 		248.1
(-2.7)
P 		258.7
(-1.9)
P 		249.7
(-2.6)
P 		244
(-3)
P 		326.2
(3)
P 		82
avr 241.6
(-2.5) 		236.2
(-3) 		305.5
(3) 		268.5
(-0.2) 		266.5
(-0.4) 		279.5
(0.7) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 78.7
(3)
P 		59.5
(0.3)
P 		58.5
(0.1)
P 		36.7
(-3)
P 		42
B 75
(3)
P 		53.2
(-1.5)
P 		51.5
(-1.8)
P 		45.7
(-3)
P 		29
C 84.1
(3)
P 		68.2
(0.8)
P 		70.6
(1.1)
P 		40.9
(-3)
P 		43
avr 79.3
(3) 		60.3
(0) 		60.2
(0) 		41.1
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 51.1
(-3)
P 		80.3
(1.3)
P 		77.3
(0.9)
P 		53.7
(-2.6)
P 		91.4
(3)
P 		58.6
(-1.9)
P 		40
B 70.9
(-3)
P 		78.2
(-1.6)
P 		73.6
(-2.5)
P 		91.2
(0.9)
P 		102.5
(3)
P 		101.4
(2.8)
P 		32
C 90.4
(1.1)
P 		75.7
(-0.4)
P 		65.8
(-1.4)
P 		50.2
(-3)
P 		79
(-0.1)
P 		109.2
(3)
P 		59
avr 70.8
(-1.7) 		78.1
(0) 		72.2
(-1.3) 		65
(-3) 		91
(3) 		89.7
(2.7) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3842
Sequence Type Exemplar sequence
Representative Public ID B0491.6 NCBI
Target Description B0491.6 /REP_DB=WormBase Gene ID /WP=CE02108 /TR=Q17513 /GB=CAA90088.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064024 NCBI Caenorhabditis elegans B0491.6 (B0491.6) mRNA, complete cds. 11/11 A 
SNAP00000040221 ENSEMBL cdna:SNAP chromosome:CEL140:II:11345960:11347701:-1 11/11 None
GENEFINDER00000040226 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11345960:11347701:-1 11/11 None
B0491.6.2 ENSEMBL cdna:known chromosome:CEL140:II:11345865:11347830:-1 gene:B0491.6 11/11 A 
B0491.6.1 ENSEMBL cdna:known chromosome:CEL140:II:11345865:11347863:-1 gene:B0491.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11345956-11347698(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0491.6
Entrez Gene 174735 Entrez gene
SwissProt Q17513 EMBL-EBI
WormBase CE02108 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90088 Hypothetical protein B0491.6 [Caenorhabditis elegans] ref|NP_496425.1| B0491.6 [Caenorhabditis elegans] 0.0
blast CAE59525 Hypothetical protein CBG02920 [Caenorhabditis briggsae] 1.0E-104
blast CAE59525 Hypothetical protein CBG02920 [Caenorhabditis briggsae] 7.0E-89
Sequence
Target Sequence 
>C. ELEGANS:179604_AT
agagaaagaatttcggtccgctatcaataatatattcacggaagttttcaaagaatttca
ctcaaagaagcaattcattcccaaaccaactcgcctggacgttccgccgtgcgaaatcga
gcgggagcatttatcaatgctgatgtcaaagttcagtatagctatggacgatccagaaaa
ggaatggaatgttgatgagcttcaggaactgcgtcgattctatacattatttcgagaaaa
aaatcatttgccattcgttcaaactaaggaattcggaaaatttctgcgtaaagcatttgg
aagactagagcattatgagcttcaacgagaaaatgacacttctcttcaagaaaaacgaaa
attttggcaagaatacaggaaaacgcatgtaccaccgaaaagagagcgaaaagcgtgcgc
ggctagaaccacaccagtaagaccttatataaaatcgaatattgatacaaaaggagaaac
tgaagaagagagaagattgcggagagctgcgtatcttcgaaagtggaggctagctcaaaa
agagaagcattcagcagacgtcatgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGAAAGAATTTCGGTCCGCTATC 683 65 906 Antisense
ATTTCGGTCCGCTATCAATAATATA 182 17 915 Antisense
GAAGCAATTCATTCCCAAACCAACT 267 341 972 Antisense
CGTTCCGCCGTGCGAAATCGAGCGG 410 247 1005 Antisense
AATCGAGCGGGAGCATTTATCAATG 299 167 1020 Antisense
GAAAAGCGTGCGCGGCTAGAACCAC 360 351 1313 Antisense
GGCTAGAACCACACCAGTAAGACCT 56 503 1326 Antisense
GAACCACACCAGTAAGACCTTATAT 226 345 1331 Antisense
ATTGCGGAGAGCTGCGTATCTTCGA 167 7 1401 Antisense
ATCTTCGAAAGTGGAGGCTAGCTCA 239 29 1418 Antisense
GAAGCATTCAGCAGACGTCATGTCA 300 341 1449 Antisense
Sequence Source Affymetrix Proprietary Database