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[179603_at]

Description F57C2.3 /REP_DB=WormBase Gene ID /WP=CE16154 /TR=O45595 /GB=CAB05525.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 362
1 2 3 4 range
A 57.2
(-2.7)
A 		94.3
(-2)
A 		39.6
(-3)
A 		371.5
(3)
P 		332
B 9.2
(-3)
A 		63.3
(-1.9)
A 		93.6
(-1.3)
A 		303.6
(3)
P 		294
C 26.1
(-3)
A 		40.4
(-2.7)
A 		80.3
(-1.9)
A 		326.2
(3)
P 		300
avr 30.8
(-3) 		66
(-2.3) 		71.2
(-2.2) 		333.8
(3) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 93.5
(-2.8)
A 		84.9
(-3)
P 		109.7
(-2.4)
A 		175.8
(-0.9)
P 		343.8
(2.9)
P 		348.7
(3)
P 		264
B 28
(-3)
A 		50.1
(-2.7)
A 		142.8
(-1.3)
P 		165.9
(-1)
P 		284.3
(0.8)
P 		436.8
(3)
P 		409
C 44
(-3)
A 		46.8
(-2.9)
A 		66.9
(-2.6)
A 		185.4
(-0.4)
P 		341.8
(2.4)
P 		376.7
(3)
P 		333
avr 55.2
(-3) 		60.6
(-2.9) 		106.5
(-2.1) 		175.7
(-0.8) 		323.3
(1.8) 		387.4
(3) 		332
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 20.8
(-1.6)
A 		20.5
(-1.6)
A 		10.3
(-3)
A 		54.4
(3)
P 		44
B 2.9
(-3)
A 		15.6
(-1.8)
A 		21.7
(-1.2)
A 		64.7
(3)
P 		62
C 8.6
(-3)
A 		11.6
(-2.6)
A 		28
(-0.5)
A 		55
(3)
P 		46
avr 10.8
(-3) 		15.9
(-2.4) 		20
(-1.8) 		58
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 17.2
(-3)
A 		30.2
(-2.1)
P 		23.9
(-2.5)
A 		44.6
(-1.1)
P 		103.7
(3)
P 		84.9
(1.7)
P 		87
B 9.8
(-3)
A 		16.7
(-2.7)
A 		34.7
(-2)
P 		44
(-1.7)
P 		115.5
(1.1)
P 		162.9
(3)
P 		153
C 16.3
(-2.9)
A 		14.3
(-3)
A 		17
(-2.9)
A 		37.3
(-1.8)
P 		110.6
(2.2)
P 		126.1
(3)
P 		112
avr 14.4
(-3) 		20.4
(-2.7) 		25.2
(-2.4) 		42
(-1.5) 		109.9
(2.2) 		124.6
(3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179603_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4009
Sequence Type Exemplar sequence
Representative Public ID F57C2.3 NCBI
Target Description F57C2.3 /REP_DB=WormBase Gene ID /WP=CE16154 /TR=O45595 /GB=CAB05525.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064616 NCBI Caenorhabditis elegans F57C2.3 (F57C2.3) mRNA, complete cds. 11/11 None
SNAP00000006885 ENSEMBL cdna:SNAP chromosome:CEL140:II:14524086:14524937:1 11/11 None
GENEFINDER00000006892 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14524086:14524937:1 11/11 None
F57C2.3 ENSEMBL cdna:known chromosome:CEL140:II:14524086:14524937:1 gene:F57C2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14524082-14524934(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57C2.3
Entrez Gene 175110 Entrez gene
SwissProt O45595 EMBL-EBI
WormBase CE16154 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05525 Hypothetical protein F57C2.3 [Caenorhabditis elegans] ref|NP_497017.1| F57C2.3 [Caenorhabditis elegans] 1.0E-145
blast CAA21777 Hypothetical protein 3R5.1 [Caenorhabditis elegans] emb|CAB76729.1| Hypothetical protein 3R5.1 [Caenorhabditis elegans] ref|NP_499848.1| 3R5.1 [Caenorhabditis elegans] 6.0E-81
blast CAD30439 Hypothetical protein F39H2.5 [Caenorhabditis elegans] ref|NP_740895.1| F39H2.5 [Caenorhabditis elegans] 4.0E-71
Sequence
Target Sequence 
>C. ELEGANS:179603_AT
gaaagttcggaccaggagcaagcgcggagaggcgagaaagaaggctatttcacgttacgc
aggattccttcaagcgatacattgttccaccaaatccacgaatcggaaaagcgattgaag
aaaatggaaaagaattactgattgaaatcgacgtttatgacgatcatcgtgatggtttga
agaatttaaattccggtgatttcgtggcaattcaaaatgtgcacgcggcgtctacgcgac
aaacagaaatgcaagttcttcatggtggcggagcatcatatcaacgtggaatcacaacag
ttccagtcgacttcgaacatgaagcttttcaaaatttcaagaaaaaggtggaagctgtac
tggaaactgttgcttacgatgaaaatttcaccgagttccaacagccagaagaagttgctg
aaaatcatgttgatgaagagcctcaagaagaagctctgccacgtggtgttgttctccgaa
cggaaacctgcgatttcatggatatggagttggacaattggccggaaggaccgccgaaaa
cattcgctgaggctatcgctcgtgctaataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGTTCGGACCAGGAGCAAGCGC 180 359 167 Antisense
TTTCACGTTACGCAGGATTCCTTCA 341 673 214 Antisense
GCGATACATTGTTCCACCAAATCCA 319 291 240 Antisense
AAAATGTGCACGCGGCGTCTACGCG 162 133 380 Antisense
TGCAAGTTCTTCATGGTGGCGGAGC 376 573 416 Antisense
GTGGCGGAGCATCATATCAACGTGG 351 491 431 Antisense
TCACCGAGTTCCAACAGCCAGAAGA 193 627 554 Antisense
GCCTCAAGAAGAAGCTCTGCCACGT 380 281 606 Antisense
GTTGTTCTCCGAACGGAAACCTGCG 367 433 634 Antisense
GGACCGCCGAAAACATTCGCTGAGG 299 523 694 Antisense
CTGAGGCTATCGCTCGTGCTAATAA 38 227 713 Antisense
Sequence Source Affymetrix Proprietary Database