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[179602_at]

Description C18E9.5 /REP_DB=WormBase Gene ID /WP=CE05297 /TR=Q18091 /GB=CAA93851.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 12      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 60      6grp_total > 33      4grp_total > 61      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 398.9
(3)
P 		368.5
(1.9)
P 		323.2
(0.2)
P 		235.5
(-3)
P 		163
B 424.2
(2.8)
P 		351.7
(-1.1)
P 		427.6
(3)
P 		317.8
(-3)
P 		110
C 406.4
(3)
P 		400.7
(2.8)
P 		382.1
(2.1)
P 		251.9
(-3)
P 		155
avr 409.8
(3) 		373.6
(1.5) 		377.6
(1.6) 		268.4
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 430.2
(1.1)
P 		428.9
(1.1)
P 		562.2
(3)
P 		282.3
(-1)
P 		151.8
(-2.8)
P 		139.4
(-3)
P 		423
B 515.6
(3)
P 		348.8
(0.2)
P 		507.6
(2.9)
P 		292
(-0.8)
P 		338.7
(-0)
P 		164.1
(-3)
P 		352
C 614.1
(3)
P 		383.9
(-0.4)
P 		420.9
(0.1)
P 		300.1
(-1.7)
P 		273.6
(-2.1)
P 		211.5
(-3)
P 		403
avr 520
(3) 		387.2
(0.7) 		496.9
(2.6) 		291.5
(-0.9) 		254.7
(-1.6) 		171.7
(-3) 		348
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 145.2
(3)
P 		80
(-0.5)
P 		84.5
(-0.3)
P 		34.5
(-3)
P 		111
B 135.3
(3)
P 		86.9
(-1.3)
P 		99.1
(-0.2)
P 		67.7
(-3)
P 		68
C 134.5
(3)
P 		115.2
(1.7)
P 		133.2
(2.9)
P 		42.5
(-3)
P 		92
avr 138.3
(3) 		94
(0) 		105.6
(0.8) 		48.2
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 79.3
(-0.7)
P 		152.5
(3)
P 		122.4
(1.5)
P 		71.6
(-1.1)
P 		45.8
(-2.4)
P 		33.9
(-3)
P 		119
B 179.4
(3)
P 		116.1
(-0.2)
P 		123.3
(0.2)
P 		77.3
(-2.2)
P 		137.6
(0.9)
P 		61.2
(-3)
P 		118
C 227.6
(3)
P 		117.1
(-1)
P 		107.1
(-1.3)
P 		60.3
(-3)
P 		88.5
(-2)
P 		70.8
(-2.6)
P 		167
avr 162.1
(3) 		128.6
(1.1) 		117.6
(0.5) 		69.7
(-2.2) 		90.6
(-1) 		55.3
(-3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3257
Sequence Type Exemplar sequence
Representative Public ID C18E9.5 NCBI
Target Description C18E9.5 /REP_DB=WormBase Gene ID /WP=CE05297 /TR=Q18091 /GB=CAA93851.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063510(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063510 NCBI Caenorhabditis elegans C18E9.5 (C18E9.5) mRNA, complete cds. 10/11 None
C18E9.5 ENSEMBL cdna:known chromosome:CEL140:II:8969893:8971559:1 gene:C18E9.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035643 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035655 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8969870-8971556(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18E9.5
Entrez Gene 182790 Entrez gene
SwissProt Q18091 EMBL-EBI
WormBase CE34704 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93851 Hypothetical protein C18E9.5 [Caenorhabditis elegans] ref|NP_495911.2| C18E9.5 [Caenorhabditis elegans] 1.0E-112
blast CAE59772 Hypothetical protein CBG03224 [Caenorhabditis briggsae] 1.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495911.2 1 36-58
C18E9.5 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:179602_AT
aagcgtgccgcattatttcaaactgataacacacattctcgctctcaatcaatttccgac
tgaaaatcgaccacagcctctttcgtttgtcttgttggacggaagcgcattaaagtatca
tgtcgagcgtttcagagaaagagcatcgaatgtaagttttaagatttcatatttggagga
ttttttattaattccagaatcgatgattttgattatggggataatgtatctattattgat
agatctgaaattgttgataaaccatacattcttcgttgatcgtaacggatgcaccagaca
agcatacggttatgatgagtatctgagaagactcggattccataagatcagaatgcaacg
aaccgagtcaatttcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCGTGCCGCATTATTTCAAACTG 647 147 18 Antisense
AACTGATAACACACATTCTCGCTCT 301 143 38 Antisense
CTCGCTCTCAATCAATTTCCGACTG 292 233 55 Antisense
GACTGAAAATCGACCACAGCCTCTT 503 375 75 Antisense
GTTTGTCTTGTTGGACGGAAGCGCA 40 453 102 Antisense
AAAGTATCATGTCGAGCGTTTCAGA 508 121 129 Antisense
AAACCATACATTCTTCGTTGATCGT 464 125 276 Antisense
GTTGATCGTAACGGATGCACCAGAC 707 437 292 Antisense
TGCACCAGACAAGCATACGGTTATG 180 577 307 Antisense
GTATCTGAGAAGACTCGGATTCCAT 196 455 336 Antisense
GCAACGAACCGAGTCAATTTCAGTT 320 319 372 Antisense
Sequence Source Affymetrix Proprietary Database