[Home] | [Total List]

[179601_at]

Description ZK228.1 /REP_DB=WormBase Gene ID /WP=CE16710 /TR=O46007 /GB=CAB04993.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 23.5
(0.5)
A 		9.7
(-2.5)
A 		34.7
(3)
A 		7.5
(-3)
A 		27
B 2.5
(-3)
A 		38.5
(3)
A 		6.2
(-2.4)
A 		3.3
(-2.9)
A 		36
C 14
(-1.6)
A 		37.8
(3)
A 		6.7
(-3)
A 		7.6
(-2.8)
A 		31
avr 13.3
(-1.1) 		28.7
(3) 		15.9
(-0.4) 		6.1
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.8
(-2.6)
A 		11.7
(3)
A 		2.1
(-3)
A 		7.1
(0.1)
A 		4.2
(-1.7)
A 		2.6
(-2.7)
A 		10
B 3.2
(-1.6)
A 		4
(-0.8)
A 		7.8
(3)
A 		7
(2.2)
A 		5.2
(0.4)
A 		1.8
(-3)
A 		6
C 11.1
(0.9)
A 		2.1
(-3)
A 		9.2
(0.1)
A 		6.3
(-1.2)
A 		3
(-2.6)
A 		15.9
(3)
A 		14
avr 5.7
(0.6) 		5.9
(1) 		6.4
(2.1) 		6.8
(3) 		4.1
(-3) 		6.8
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.5
(2.6)
A 		2.1
(-2.3)
A 		9.1
(3)
A 		1.1
(-3)
A 		8
B 0.8
(-2.9)
A 		9.5
(3)
A 		1.4
(-2.5)
A 		0.7
(-3)
A 		9
C 4.6
(-0.9)
A 		10.9
(3)
A 		2.3
(-2.4)
A 		1.3
(-3)
A 		10
avr 4.6
(0.3) 		7.5
(3) 		4.3
(0) 		1
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.5
(-3)
A 		4.2
(3)
A 		0.5
(-3)
A 		1.8
(-0.9)
A 		1.3
(-1.7)
A 		0.6
(-2.8)
A 		4
B 1.1
(-1.3)
A 		1.3
(-0.4)
A 		1.9
(2.1)
A 		1.9
(2.1)
A 		2.1
(3)
A 		0.7
(-3)
A 		1
C 4.1
(1.5)
A 		0.6
(-3)
A 		2.3
(-0.8)
A 		1.3
(-2.1)
A 		1
(-2.5)
A 		5.3
(3)
A 		5
avr 1.9
(0.4) 		2
(1.3) 		1.6
(-2.1) 		1.7
(-1.3) 		1.5
(-3) 		2.2
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13083
Sequence Type Exemplar sequence
Representative Public ID ZK228.1 NCBI
Target Description ZK228.1 /REP_DB=WormBase Gene ID /WP=CE16710 /TR=O46007 /GB=CAB04993.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075211 NCBI Caenorhabditis elegans ZK228.1 (ZK228.1) mRNA, complete cds. 11/11 None
SNAP00000029493 ENSEMBL cdna:SNAP chromosome:CEL140:V:18448489:18449593:1 11/11 None
GENEFINDER00000029509 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18446992:18449593:1 11/11 None
ZK228.1 ENSEMBL cdna:known chromosome:CEL140:V:18446992:18449593:1 gene:ZK228.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl ZK228.1
Entrez Gene 191250 Entrez gene
SwissProt O46007 EMBL-EBI
WormBase CE16710 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04993 Hypothetical protein ZK228.1 [Caenorhabditis elegans] ref|NP_507612.1| ZK228.1 [Caenorhabditis elegans] 0.0
blast AAK84516 Hypothetical protein F07B7.7 [Caenorhabditis elegans] gb|AAA96111.1| Hypothetical protein ZC411.1 [Caenorhabditis elegans] ref|NP_505287.1| ZC411.1 [Caenorhabditis elegans] ref|NP_505272.1| F07B7.7 [Caenorhabditis elegans] 1.0E-122
blast AAK84516 Hypothetical protein F07B7.7 [Caenorhabditis elegans] gb|AAA96111.1| Hypothetical protein ZC411.1 [Caenorhabditis elegans] ref|NP_505287.1| ZC411.1 [Caenorhabditis elegans] ref|NP_505272.1| F07B7.7 [Caenorhabditis elegans] 1.0E-115
blast AAK18923 Hypothetical protein EGAP798.1 [Caenorhabditis elegans] ref|NP_505286.1| EGAP798.1 [Caenorhabditis elegans] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:179601_AT
gacaacacggcgtcttgatcgggttgggcacaaccatcgttattggtttggactcccaag
taatcaaggagctctgcatgaagacttacaagtcgcagaggaggaaaggctcagtgcgca
gcttgtaccaaccaaagctcgtatctgggaatctccactacatgacattggacagttgag
aaatgccctcgaaatcccagttcccacggataaccaggctgtgcgtcttcgtattggttg
gatgattcatctgctaacttgtcaactccctcctgaaacggtcaaccagggttcgtacgt
tgaagtactggactacttgaagatcttacgggcggcgacaaaactcgttctcagcatccg
cgaagaagcctctaccgtaaggattgagctctcgacctgtatgagacatatggccacatc
atccgcgagaggtcacaatttggtactacccacttttggacttttcgtgaagtatgcgat
ggggaaatgggagtcgtggctgaatggttgttgggatcacgtctacgatgagatcacgct
cagacacgttgagtcatgcccatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAACACGGCGTCTTGATCGGGTT 622 365 1629 Antisense
GAAAGGCTCAGTGCGCAGCTTGTAC 588 359 1732 Antisense
GCTCGTATCTGGGAATCTCCACTAC 691 297 1765 Antisense
GTTCCCACGGATAACCAGGCTGTGC 676 441 1828 Antisense
CTGTGCGTCTTCGTATTGGTTGGAT 648 239 1847 Antisense
TTCATCTGCTAACTTGTCAACTCCC 113 689 1874 Antisense
GCGACAAAACTCGTTCTCAGCATCC 130 289 1963 Antisense
AGGATTGAGCTCTCGACCTGTATGA 461 57 2008 Antisense
TGAGACATATGGCCACATCATCCGC 332 567 2030 Antisense
ATGGTTGTTGGGATCACGTCTACGA 346 49 2132 Antisense
CAGACACGTTGAGTCATGCCCATGC 525 205 2169 Antisense
Sequence Source Affymetrix Proprietary Database