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[179600_at]

Description C38C6.3 /REP_DB=WormBase Gene ID /WP=CE15695 /TR=O45299 /GB=CAB07563.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 491
1 2 3 4 range
A 4.7
(-3)
A 		449.8
(3)
P 		355.8
(1.7)
P 		47.5
(-2.4)
A 		445
B 4
(-3)
A 		362.7
(1.4)
P 		495.4
(3)
P 		29.5
(-2.7)
A 		491
C 10.6
(-3)
A 		336.4
(1.5)
P 		446.8
(3)
P 		63.4
(-2.3)
A 		436
avr 6.4
(-3) 		383
(2.3) 		432.7
(3) 		46.8
(-2.4) 		426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 31.4
(-3)
A 		247.1
(2.8)
P 		208.2
(1.7)
P 		255.1
(3)
P 		188
(1.2)
P 		48.8
(-2.5)
A 		224
B 16.7
(-3)
A 		176.3
(1.4)
P 		147.2
(0.6)
P 		235.3
(3)
P 		230.5
(2.9)
P 		48.8
(-2.1)
A 		219
C 5.7
(-3)
A 		190.4
(2.2)
P 		109.7
(-0.1)
P 		219.1
(3)
P 		190.9
(2.2)
P 		36.9
(-2.1)
A 		213
avr 17.9
(-3) 		204.6
(2.1) 		155
(0.8) 		236.5
(3) 		203.1
(2.1) 		44.8
(-2.3) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 1.7
(-3)
A 		97.6
(3)
P 		93
(2.7)
P 		7
(-2.7)
A 		96
B 1.3
(-3)
A 		89.6
(1.7)
P 		114.8
(3)
P 		6.3
(-2.7)
A 		114
C 3.5
(-3)
A 		96.7
(0.7)
P 		155.7
(3)
P 		10.7
(-2.7)
A 		152
avr 2.2
(-3) 		94.6
(1.7) 		121.2
(3) 		8
(-2.7) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 5.8
(-3)
A 		87.9
(3)
P 		45.3
(-0.1)
P 		64.7
(1.3)
P 		56.7
(0.7)
P 		11.9
(-2.6)
A 		82
B 5.8
(-3)
A 		58.7
(0.6)
P 		35.7
(-1)
P 		62.3
(0.9)
P 		93.7
(3)
P 		18.2
(-2.2)
A 		88
C 2.1
(-3)
A 		58.1
(2.6)
P 		27.9
(-0.4)
P 		44.1
(1.2)
P 		61.8
(3)
P 		12.4
(-2)
A 		60
avr 4.6
(-3) 		68.2
(2.8) 		36.3
(-0.1) 		57
(1.8) 		70.7
(3) 		14.2
(-2.1) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179600_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3175
Sequence Type Exemplar sequence
Representative Public ID C38C6.3 NCBI
Target Description C38C6.3 /REP_DB=WormBase Gene ID /WP=CE15695 /TR=O45299 /GB=CAB07563.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064640(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064640 NCBI Caenorhabditis elegans C38C6.3 (C38C6.3) mRNA, complete cds. 11/11 None
SNAP00000016880 ENSEMBL cdna:SNAP chromosome:CEL140:II:14632424:14634471:1 11/11 None
GENEFINDER00000016889 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14633090:14634471:1 11/11 None
C38C6.3 ENSEMBL cdna:known chromosome:CEL140:II:14633090:14634485:1 gene:C38C6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14633086-14634468(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C38C6.3
Entrez Gene 175124 Entrez gene
SwissProt O45299 EMBL-EBI
WormBase CE15695 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07563 Hypothetical protein C38C6.3 [Caenorhabditis elegans] ref|NP_497041.1| C38C6.3 [Caenorhabditis elegans] 1.0E-178
blast CAB07563 Hypothetical protein C38C6.3 [Caenorhabditis elegans] ref|NP_497041.1| C38C6.3 [Caenorhabditis elegans] 1.0E-165
blast CAE65895 Hypothetical protein CBG11062 [Caenorhabditis briggsae] 1.0E-154
blast CAE59759 Hypothetical protein CBG03211 [Caenorhabditis briggsae] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:179600_AT
atcttcaacttttctgccagcaattctcggatatgtgtggagttccgaacattaatttgt
acccaagtaggtatcaaaacgcagacgacgaaggacgaccagctggttatggtcaaaaac
agaaaaatggaaactttggaattggtagaagttgggcgtttggattaggtgccattccgg
gaatggaggtcaggacaagtcagggagccgatattggtaatgagaagttgccattctttg
atcagattggtggtatgatgataaattatggaggagaagtcggagtactcggaaagcgca
ccggtaagggtccagctcgctccatgaacgccctggcccgaggcttcccatctttcggcg
tcgggccaccaaacaaggccgccgatcagcaattcggggaatccgtggcaaaagctcttg
gtgttccatctcttaacaatgtgttcaataagttggccaagaattctaagaacaagaaga
tctcaggctacgagccaggatatggagctgtaaatccacatggtccatttgctatcggaa
agaccgacttggatgatctcaacctgccaggagggttcggagctgtcgagattctcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTCAACTTTTCTGCCAGCAATT 660 31 371 Antisense
CGCAGACGACGAAGGACGACCAGCT 376 251 450 Antisense
TTGGATTAGGTGCCATTCCGGGAAT 278 709 530 Antisense
GAAGTTGCCATTCTTTGATCAGATT 303 337 594 Antisense
AAAGCGCACCGGTAAGGGTCCAGCT 144 121 663 Antisense
ACAAGGCCGCCGATCAGCAATTCGG 577 113 743 Antisense
AAAAGCTCTTGGTGTTCCATCTCTT 84 133 780 Antisense
GGAGCTGTAAATCCACATGGTCCAT 412 521 874 Antisense
CCGACTTGGATGATCTCAACCTGCC 92 263 914 Antisense
TCAACCTGCCAGGAGGGTTCGGAGC 451 631 929 Antisense
GGTTCGGAGCTGTCGAGATTCTCAG 174 507 944 Antisense
Sequence Source Affymetrix Proprietary Database