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[179599_at]

Description ZK228.4 /REP_DB=WormBase Gene ID /WP=CE16713 /TR=O46010 /GB=CAB04996.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 50      6grp_total > 23      4grp_total > 61      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 675
1 2 3 4 range
A 605.4
(3)
P 		367.1
(0.6)
P 		451.9
(1.4)
P 		15.7
(-3)
A 		590
B 690.3
(3)
P 		478.4
(1.1)
P 		477.2
(1.1)
P 		22.2
(-3)
A 		668
C 568.8
(2.4)
P 		624.7
(3)
P 		425.9
(0.7)
P 		97.7
(-3)
P 		527
avr 621.5
(3) 		490.1
(1.6) 		451.7
(1.2) 		45.2
(-3) 		576

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 273.5
(2.8)
P 		252.2
(2.2)
P 		283.6
(3)
P 		219.6
(1.4)
P 		36.6
(-3)
A 		56.4
(-2.5)
A 		247
B 209.9
(3)
P 		187.2
(2)
P 		164.6
(1.1)
P 		122.6
(-0.7)
P 		101.8
(-1.6)
M 		69
(-3)
A 		141
C 288.5
(2.4)
P 		183.4
(-0.2)
P 		314.8
(3)
P 		149.5
(-1)
P 		67.6
(-3)
P 		70.9
(-2.9)
A 		247
avr 257.3
(3) 		207.6
(1.4) 		254.3
(2.9) 		163.9
(0.1) 		68.7
(-2.9) 		65.4
(-3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 220.4
(3)
P 		79.7
(-0.9)
P 		118.1
(0.2)
P 		2.3
(-3)
A 		218
B 220.1
(3)
P 		118.1
(0.2)
P 		110.6
(-0.1)
P 		4.7
(-3)
A 		215
C 188.3
(3)
P 		179.6
(2.7)
P 		148.4
(1.6)
P 		16.5
(-3)
P 		172
avr 209.6
(3) 		125.8
(0.5) 		125.7
(0.5) 		7.8
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 50.4
(0)
P 		89.7
(3)
P 		61.8
(0.9)
P 		55.7
(0.4)
P 		11
(-3)
A 		13.7
(-2.8)
A 		79
B 73
(3)
P 		62.3
(1.6)
P 		40
(-1.2)
P 		32.5
(-2.1)
P 		41.4
(-1)
M 		25.7
(-3)
A 		47
C 106.9
(3)
P 		56
(-0.6)
P 		80.1
(1.1)
P 		30.1
(-2.4)
P 		21.9
(-3)
P 		23.7
(-2.9)
A 		85
avr 76.8
(3) 		69.3
(2.2) 		60.6
(1.3) 		39.4
(-1) 		24.8
(-2.6) 		21
(-3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13407
Sequence Type Exemplar sequence
Representative Public ID ZK228.4 NCBI
Target Description ZK228.4 /REP_DB=WormBase Gene ID /WP=CE16713 /TR=O46010 /GB=CAB04996.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075214(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075214 NCBI Caenorhabditis elegans ZK228.4 (ZK228.4) mRNA, complete cds. 11/11 None
SNAP00000029497 ENSEMBL cdna:SNAP chromosome:CEL140:V:18465389:18467894:1 11/11 None
GENEFINDER00000029506 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18465389:18467894:1 11/11 None
ZK228.4 ENSEMBL cdna:known chromosome:CEL140:V:18465378:18467894:1 gene:ZK228.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18465388-18467894(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK228.4
Entrez Gene 180201 Entrez gene
SwissProt O46010 EMBL-EBI
WormBase CE16713 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04996 Hypothetical protein ZK228.4 [Caenorhabditis elegans] ref|NP_507615.1| ZK228.4 [Caenorhabditis elegans] 1.0E-171
blast CAB04996 Hypothetical protein ZK228.4 [Caenorhabditis elegans] ref|NP_507615.1| ZK228.4 [Caenorhabditis elegans] 1.0E-168
blast CAB04995 Hypothetical protein ZK228.3 [Caenorhabditis elegans] ref|NP_507614.1| ZK228.3 [Caenorhabditis elegans] 1.0E-123
blast CAB04995 Hypothetical protein ZK228.3 [Caenorhabditis elegans] ref|NP_507614.1| ZK228.3 [Caenorhabditis elegans] 1.0E-113
blast CAE56201 Hypothetical protein CBG23825 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 1.7E-5
Sequence
Target Sequence 
>C. ELEGANS:179599_AT
gatacttgtgcattgttctctgcagttaatatgtcgaaaaagtactcggaagtgttcggt
tttgataacttgtctccttattggataatggaagctaaaatagacccatctaagttcaaa
attccaaaaaatttggattctgacgtcattgtaaaggactggaaagaggtggatgaagct
cagctagaagcctatgacctgacaatttgctcccgaaaccgcaaaaaaatcatgagaaat
tggtttcagcaggatgaggtttataccagggtagcaatagacagtaaccagaaaattgtt
ggttactgtaccatccgagtcgtcaacctgaatcgcatccgggcttcaccgttttacgct
gaaaatggagaaattgcagccaaattgctggctgaaactgtgaaaattattccgaatttt
gaaaaattcgatcagctcaagttttactacccatcggttaataaggaaatggagagtttg
ctcccaaaattcctgccagccgacgggtacactgttaaggagaacaatcgggtgcagttc
accaagaatttcatcaaatcccgggatgaagctgtgtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTTGTGCATTGTTCTCTGCAG 571 423 286 Antisense
GTACTCGGAAGTGTTCGGTTTTGAT 146 459 327 Antisense
TCGGTTTTGATAACTTGTCTCCTTA 201 607 341 Antisense
GACCCATCTAAGTTCAAAATTCCAA 535 381 388 Antisense
TATGACCTGACAATTTGCTCCCGAA 291 657 478 Antisense
AATTGTTGGTTACTGTACCATCCGA 4 179 579 Antisense
AGCTCAAGTTTTACTACCCATCGGT 275 79 719 Antisense
GAGAGTTTGCTCCCAAAATTCCTGC 543 395 757 Antisense
TGCCAGCCGACGGGTACACTGTTAA 557 585 779 Antisense
GAACAATCGGGTGCAGTTCACCAAG 425 349 807 Antisense
AAATCCCGGGATGAAGCTGTGTATT 574 117 841 Antisense
Sequence Source Affymetrix Proprietary Database