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[179598_s_at]

Description C04H5.2 /REP_DB=WormBase Gene ID /WP=CE15588 /TR=O62025 /GB=CAB03841.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 128.9
(-1.3)
A 		128.8
(-1.3)
A 		113
(-3)
A 		168.9
(3)
A 		56
B 93.2
(-3)
A 		120.9
(3)
A 		100.4
(-1.4)
A 		93.8
(-2.9)
A 		28
C 114.9
(-2.9)
A 		139.1
(3)
A 		121.7
(-1.3)
A 		114.6
(-3)
A 		25
avr 112.3
(-2.8) 		129.6
(3) 		111.7
(-3) 		125.8
(1.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 133
(-0.1)
A 		96.3
(-3)
A 		109.4
(-2)
A 		96.3
(-3)
A 		171.3
(3)
A 		103.5
(-2.4)
M 		75
B 65.4
(-3)
A 		99.9
(-1.1)
A 		97.7
(-1.2)
A 		97
(-1.3)
A 		174
(3)
A 		86.9
(-1.8)
A 		109
C 125
(-0.6)
A 		163.5
(2.3)
A 		91.7
(-3)
A 		96
(-2.7)
A 		173.5
(3)
A 		151.6
(1.4)
A 		82
avr 107.8
(-2.1) 		119.9
(-1.2) 		99.6
(-2.7) 		96.4
(-3) 		172.9
(3) 		114
(-1.6) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 47
(3)
A 		28
(-2.1)
A 		29.5
(-1.7)
A 		24.7
(-3)
A 		22
B 29.7
(2.9)
A 		29.9
(3)
A 		23.3
(-1)
A 		20
(-3)
A 		10
C 38
(1.9)
A 		40
(2.4)
A 		42.4
(3)
A 		19.3
(-3)
A 		23
avr 38.2
(3) 		32.6
(1) 		31.7
(0.7) 		21.3
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 24.5
(-2.8)
A 		34.2
(-0.8)
A 		23.8
(-3)
A 		24.4
(-2.9)
A 		51.7
(3)
A 		25.2
(-2.7)
M 		28
B 22.8
(-3)
A 		33.2
(-1.7)
A 		23.7
(-2.9)
A 		25.7
(-2.6)
A 		70.7
(3)
A 		32.4
(-1.8)
A 		48
C 46.3
(1.4)
A 		49.9
(2)
A 		23.3
(-2.3)
A 		19.3
(-3)
A 		56.1
(3)
A 		50.7
(2.1)
A 		37
avr 31.2
(-1.7) 		39.1
(-0.4) 		23.6
(-2.9) 		23.1
(-3) 		59.5
(3) 		36.1
(-0.9) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179598_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3267
Sequence Type Exemplar sequence
Representative Public ID C04H5.2 NCBI
Target Description C04H5.2 /REP_DB=WormBase Gene ID /WP=CE15588 /TR=O62025 /GB=CAB03841.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064621 NCBI Caenorhabditis elegans C04H5.2 (C04H5.2) mRNA, complete cds. 11/11 None
SNAP00000026414 ENSEMBL cdna:SNAP chromosome:CEL140:II:14535860:14537450:-1 11/11 None
GENEFINDER00000026422 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14535050:14548665:-1 11/11 None
C04H5.2 ENSEMBL cdna:known chromosome:CEL140:II:14535826:14537453:-1 gene:C04H5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14535852-14537447(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04H5.2
Entrez Gene 175114 Entrez gene
SwissProt O62025 EMBL-EBI
WormBase CE15588 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03842 Hypothetical protein C04H5.3 [Caenorhabditis elegans] ref|NP_497026.2| C04H5.3 [Caenorhabditis elegans] 0.0
blast T18932 hypothetical protein C04H5.4a - Caenorhabditis elegans 0.0
blast NP_500309 Guanylyl CYclase family member (gcy-23) [Caenorhabditis elegans] gb|AAC17555.3| Guanylyl cyclase protein 23 [Caenorhabditis elegans] 0.0
blast CAB03841 Hypothetical protein C04H5.2 [Caenorhabditis elegans] ref|NP_497022.1| C04H5.2 [Caenorhabditis elegans] 1.0E-131
blast CAE73430 Hypothetical protein CBG20873 [Caenorhabditis briggsae] 7.0E-48
blast AAC46771 Hypothetical protein EEED8.11 [Caenorhabditis elegans] ref|NP_495020.1| EEED8.11 [Caenorhabditis elegans] sp|Q09300|YQOB_CAEEL Hypothetical protein EEED8.11 in chromosome II precursor 6.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.16
Pfam IPR000719 EMBL-EBI Protein kinase 1.8E-8
Pfam IPR001054 EMBL-EBI Guanylate cyclase 8.4E-66
Pfam IPR001828 EMBL-EBI Extracellular ligand-binding receptor 5.7E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000026422 2 5-22,460-479
Sequence
Target Sequence 
>C. ELEGANS:179598_S_AT
aatacccaagaactccatcggcaagtaacaataatcaggacgcgtattgtctcaaattca
tctcatctaacaccaccatcaccatcaacaatgcctctcaaatatgtcagcaagccggcg
gacacctaactgcttttgagaacgagattgaacgacaagctattatggcagaagctggtg
accatatcaccaagaccatcaaatctacaatcggagcaattgcgctcgctggtgatcgta
tcaaacagtgctcaactaaaaattcaacaatcatcgagaatcccccgtgcaacgataaga
caaaagtgttcaccctcccacttacggcccagacgaatccagagtatttgtggacaactt
gggctcaaggagagccaagtgcaaattggtgggaatacgatatcgaggattgcctccaaa
tgttcataaatccgtccaataacaccggagcatcgggacgaatcaatgatttctactgta
acaggctggtggctccgaatgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACCCAAGAACTCCATCGGCAAG 264 173 230 Antisense
GCCTCTCAAATATGTCAGCAAGCCG 52 283 322 Antisense
CGGACACCTAACTGCTTTTGAGAAC 84 243 348 Antisense
GTGACCATATCACCAAGACCATCAA 188 483 407 Antisense
AGCAATTGCGCTCGCTGGTGATCGT 157 77 444 Antisense
CAACAATCATCGAGAATCCCCCGTG 8 191 494 Antisense
GAATCCCCCGTGCAACGATAAGACA 96 329 507 Antisense
TAAGACAAAAGTGTTCACCCTCCCA 139 635 525 Antisense
CTTACGGCCCAGACGAATCCAGAGT 709 219 550 Antisense
GAGGATTGCCTCCAAATGTTCATAA 234 403 634 Antisense
TAACAGGCTGGTGGCTCCGAATGAG 237 639 708 Antisense
Sequence Source Affymetrix Proprietary Database