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[179597_at]

Description B0399.2 /REP_DB=WormBase Gene ID /WP=CE20454 /TR=Q9XTD1 /GB=CAA21519.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 40      6grp_total > 22      4grp_total > 55      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 124.6
(3)
P 		70.8
(-1.9)
P 		85.6
(-0.5)
P 		58.1
(-3)
P 		67
B 125.1
(3)
P 		70.7
(-0.9)
M 		73.7
(-0.7)
P 		42.4
(-3)
A 		83
C 120.1
(3)
P 		94.8
(0.4)
P 		61.8
(-3)
A 		87.9
(-0.3)
P 		58
avr 123.3
(3) 		78.8
(-1.4) 		73.7
(-1.9) 		62.8
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 113.2
(2.9)
P 		114.2
(3)
P 		86.2
(1)
P 		70.5
(-0.1)
P 		29.1
(-3)
A 		31.3
(-2.8)
A 		85
B 103.2
(2)
P 		97.6
(1.5)
P 		115.9
(3)
P 		49.1
(-2.4)
A 		47.7
(-2.5)
A 		41.5
(-3)
A 		74
C 50.8
(-1.6)
P 		88.4
(3)
P 		83.1
(2.3)
P 		63.9
(-0)
A 		53.8
(-1.3)
A 		39.7
(-3)
A 		49
avr 89.1
(1.9) 		100.1
(3) 		95.1
(2.5) 		61.2
(-0.7) 		43.5
(-2.4) 		37.5
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 45.4
(3)
P 		15.4
(-1.9)
P 		22.4
(-0.7)
P 		8.5
(-3)
P 		37
B 39.9
(3)
P 		17.5
(-1.3)
M 		17.1
(-1.4)
P 		9
(-3)
A 		31
C 39.8
(3)
P 		27.3
(0)
P 		21.5
(-1.4)
A 		14.8
(-3)
P 		25
avr 41.7
(3) 		20.1
(-1.2) 		20.3
(-1.2) 		10.8
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 20.9
(-0.6)
P 		40.6
(3)
P 		18.8
(-1)
P 		17.9
(-1.1)
P 		8.8
(-2.8)
A 		7.6
(-3)
A 		33
B 35.9
(3)
P 		32.5
(2.1)
P 		28.1
(1)
P 		13
(-3)
A 		19.4
(-1.3)
A 		15.5
(-2.3)
A 		23
C 18.8
(-0.5)
P 		27
(3)
P 		21.2
(0.5)
P 		12.8
(-3)
A 		17.4
(-1.1)
A 		13.3
(-2.8)
A 		14
avr 25.2
(0.7) 		33.4
(3) 		22.7
(-0) 		14.6
(-2.3) 		15.2
(-2.1) 		12.1
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12649
Sequence Type Exemplar sequence
Representative Public ID B0399.2 NCBI
Target Description B0399.2 /REP_DB=WormBase Gene ID /WP=CE20454 /TR=Q9XTD1 /GB=CAA21519.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075398(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075398 NCBI Caenorhabditis elegans B0399.2 (B0399.2) mRNA, complete cds. 11/11 None
B0399.2 ENSEMBL cdna:known chromosome:CEL140:V:19550676:19558419:-1 gene:B0399.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19550675-19558419(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0399.2
Entrez Gene 181961 Entrez gene
SwissProt Q9XTD1 EMBL-EBI
WormBase CE36626 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03808 Hypothetical protein B0399.2 [Caenorhabditis elegans] emb|CAA21519.2| Hypothetical protein B0399.2 [Caenorhabditis elegans] ref|NP_507799.2| B0399.2 [Caenorhabditis elegans] 0.0
blast CAB07360 Hypothetical protein F11A5.8 [Caenorhabditis elegans] ref|NP_507088.1| F11A5.8 [Caenorhabditis elegans] 0.0
blast CAB11538 Hypothetical protein H12I19.4 [Caenorhabditis elegans] ref|NP_502710.2| H12I19.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 6.90000009536743
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 8.4E-123
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507799.2 9 7-26,30-49,70-89,134-156,169-191,254-271,283-305,309-331,671-693
B0399.2 9 7-26,30-49,70-89,134-156,169-191,254-271,283-305,309-331,671-693
Sequence
Target Sequence 
>C. ELEGANS:179597_AT
gtctcttctagtattcattatgggccttgtctacatgactacagtagtcctggcgagcca
aacggagcacgttgtcactgggtgctcaaaaatggaccagatacggggagtcaagtgtgc
gccgaaaatcaataaactctctgtggagctagaagaattacaacccggatacgccaatcc
agataggttccaaaatatttcagagacttgcgatcaagctttggagtgcgtggagccgat
aaaatgcaagacaattagtttagagttcaaattcgtcaagaggtcgtgtaaagtttttaa
tatggcagctgtaaaatacaatacttgtttgaaaaagctccaaacccgcttctacctagg
atttgctccgtgcctccgcccgctgctgagcactgaagaggtcgagaatttcgagatgtg
ccagatgttcgaaatgtaccgcgattgcataaaattagagattgtcgagcattgcggctc
ggaaatgatgctccatgagctcgtcggcgatgttatggaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCTTCTAGTATTCATTATGGGC 196 471 2076 Antisense
ATGGGCCTTGTCTACATGACTACAG 77 51 2095 Antisense
CTACAGTAGTCCTGGCGAGCCAAAC 631 223 2114 Antisense
AACGGAGCACGTTGTCACTGGGTGC 121 141 2136 Antisense
GGGAGTCAAGTGTGCGCCGAAAATC 137 495 2181 Antisense
AGAATTACAACCCGGATACGCCAAT 87 63 2229 Antisense
GATACGCCAATCCAGATAGGTTCCA 148 425 2243 Antisense
TGAAAAAGCTCCAAACCCGCTTCTA 430 571 2405 Antisense
CGCTTCTACCTAGGATTTGCTCCGT 501 253 2422 Antisense
AATGATGCTCCATGAGCTCGTCGGC 201 165 2559 Antisense
GCTCGTCGGCGATGTTATGGAACTT 468 297 2574 Antisense
Sequence Source Affymetrix Proprietary Database